Variant report

Variant	rs73892931
Chromosome Location	chr3:196447425-196447426
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:196438582..196440986-chr3:196446218..196447812,3	MCF-7	breast:
2	chr3:196441905..196444487-chr3:196446097..196449623,3	K562	blood:
3	chr3:196438106..196440827-chr3:196446972..196450251,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163964	Chromatin interaction
ENSG00000174007	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59114665	1.00[EUR][1000 genomes]
rs60126648	1.00[EUR][1000 genomes]
rs73892919	1.00[EUR][1000 genomes]
rs7617002	1.00[EUR][1000 genomes]
rs7626116	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948681	chr3:196148055-197007546	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1014692	chr3:196242249-196531824	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv878187	chr3:196245603-196554790	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv491864	chr3:196263064-196468533	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv829828	chr3:196268121-196463641	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv1010643	chr3:196288064-196788645	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
7	nsv878188	chr3:196312124-196553867	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv1003135	chr3:196348721-196738953	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	nsv1013920	chr3:196370580-196452741	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv1014526	chr3:196372422-196460169	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1008083	chr3:196374919-196460768	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv536897	chr3:196374919-196460768	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv878189	chr3:196379916-196452093	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv997965	chr3:196380144-196550222	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv1009975	chr3:196407281-196549742	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
16	nsv1001045	chr3:196429953-196627255	Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
17	nsv878190	chr3:196442132-196499496	Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:196440000-196448400	Weak transcription	Ovary	ovary
2	chr3:196440000-196448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:196440000-196466400	Weak transcription	Gastric	stomach
4	chr3:196440000-196466400	Weak transcription	Lung	lung
5	chr3:196440200-196447800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:196440200-196448200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:196440200-196448600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr3:196440200-196448600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:196440200-196448600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:196440200-196448800	Weak transcription	HSMM	muscle
11	chr3:196440200-196449200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:196440200-196452400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:196440200-196453800	Weak transcription	NH-A	brain
14	chr3:196440200-196454800	Weak transcription	Thymus	Thymus
15	chr3:196440200-196454800	Weak transcription	HSMMtube	muscle
16	chr3:196440200-196455000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:196440200-196457000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:196440200-196458200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:196440200-196466200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:196440200-196466200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:196440200-196466400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:196440200-196466400	Weak transcription	Brain Angular Gyrus	brain
23	chr3:196440200-196466400	Weak transcription	Brain Substantia Nigra	brain
24	chr3:196440200-196466400	Weak transcription	Psoas Muscle	Psoas
25	chr3:196440200-196466600	Weak transcription	Aorta	Aorta
26	chr3:196440400-196449000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr3:196440400-196449200	Weak transcription	NHLF	lung
28	chr3:196440400-196451000	Weak transcription	Fetal Heart	heart
29	chr3:196440400-196453400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:196440400-196453400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr3:196440400-196453400	Weak transcription	HMEC	breast
32	chr3:196440400-196453600	Weak transcription	NHDF-Ad	bronchial
33	chr3:196440400-196453800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr3:196440400-196454400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr3:196440400-196454800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr3:196440400-196454800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:196440400-196455000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:196440400-196458000	Weak transcription	Pancreas	Pancrea
39	chr3:196440400-196460800	Weak transcription	Colonic Mucosa	Colon
40	chr3:196440600-196448000	Weak transcription	Fetal Intestine Large	intestine
41	chr3:196440600-196448200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:196440600-196448600	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:196440600-196449200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:196440600-196449400	Weak transcription	Placenta	Placenta
45	chr3:196440600-196451400	Weak transcription	Primary B cells from cord blood	blood
46	chr3:196440600-196453400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr3:196440600-196453400	Weak transcription	Liver	Liver
48	chr3:196440600-196453600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr3:196440600-196453600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr3:196440600-196454800	Weak transcription	Adipose Nuclei	Adipose

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