Variant report

Variant	rs73896494
Chromosome Location	chr20:10983060-10983061
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:10652161..10655913-chr20:10980894..10985138,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101384	Chromatin interaction
ENSG00000270792	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3949863	0.92[ASN][1000 genomes]
rs6077995	0.92[ASN][1000 genomes]
rs6077997	0.92[ASN][1000 genomes]
rs6131139	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6134093	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6134098	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6134101	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10980600-10985000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr20:10981200-10985000	Enhancers	HUVEC	blood vessel
3	chr20:10981600-10983600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr20:10981800-10983600	Enhancers	NH-A	brain
5	chr20:10981800-10983800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr20:10981800-10984000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr20:10981800-10984200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr20:10982000-10983200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr20:10982000-10983600	Flanking Active TSS	A549	lung
10	chr20:10982000-10984000	Enhancers	Fetal Lung	lung
11	chr20:10982200-10983400	Enhancers	NHDF-Ad	bronchial
12	chr20:10982200-10983800	Enhancers	HSMM	muscle
13	chr20:10982400-10983200	Enhancers	Fetal Muscle Leg	muscle
14	chr20:10982400-10983200	Enhancers	Psoas Muscle	Psoas
15	chr20:10982400-10983200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr20:10982400-10983400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr20:10982400-10983400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr20:10982400-10983800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr20:10982600-10983200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr20:10982600-10983200	Enhancers	HSMMtube	muscle
21	chr20:10982600-10983600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr20:10982800-10983200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr20:10982800-10983200	Enhancers	Fetal Stomach	stomach
24	chr20:10982800-10983400	Enhancers	Adipose Nuclei	Adipose
25	chr20:10982800-10983600	Flanking Active TSS	NHEK	skin
26	chr20:10982800-10983800	Weak transcription	Left Ventricle	heart
27	chr20:10982800-10985000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr20:10983000-10983200	Enhancers	HMEC	breast
29	chr20:10983000-10983600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr20:10983000-10983600	Enhancers	Osteobl	bone
31	chr20:10983000-10983800	Enhancers	Hela-S3	cervix

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