Variant report

Variant	rs6077995
Chromosome Location	chr20:10968618-10968619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3949863	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074217	0.84[EUR][1000 genomes]
rs6074221	0.83[EUR][1000 genomes]
rs6077997	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6131139	0.97[ASN][1000 genomes]
rs6134093	0.95[ASN][1000 genomes]
rs6134098	0.92[ASN][1000 genomes]
rs6134101	0.91[ASN][1000 genomes]
rs62185670	0.83[EUR][1000 genomes]
rs7262797	0.81[EUR][1000 genomes]
rs73896494	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10963800-10969000	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr20:10963800-10973400	Weak transcription	Fetal Lung	lung
3	chr20:10963800-10982600	Weak transcription	Right Atrium	heart
4	chr20:10964200-10973400	Weak transcription	HSMMtube	muscle
5	chr20:10964400-10970000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr20:10964800-10970000	Enhancers	NHEK	skin
7	chr20:10964800-10970200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr20:10965400-10969000	Enhancers	NHDF-Ad	bronchial
9	chr20:10965600-10969000	Enhancers	Osteobl	bone
10	chr20:10966000-10972800	Weak transcription	Fetal Muscle Leg	muscle
11	chr20:10967600-10969000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr20:10968200-10969000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr20:10968400-10969200	Enhancers	HMEC	breast
14	chr20:10968400-10971600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr20:10968600-10968800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr20:10968600-10972600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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