Variant report

Variant	rs7262797
Chromosome Location	chr20:10989692-10989693
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17799974	1.00[ASN][1000 genomes]
rs3949863	0.81[EUR][1000 genomes]
rs56323540	1.00[ASN][1000 genomes]
rs6074194	1.00[ASN][1000 genomes]
rs6074217	0.84[EUR][1000 genomes]
rs6074221	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074228	1.00[ASN][1000 genomes]
rs6077955	1.00[ASN][1000 genomes]
rs6077995	0.81[EUR][1000 genomes]
rs6077997	0.81[EUR][1000 genomes]
rs6078017	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6078035	1.00[ASN][1000 genomes]
rs62185670	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73086911	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758513	chr20:10892138-11116725	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758781	chr20:10892138-11116725	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10983600-10994000	Weak transcription	Osteobl	bone
2	chr20:10984000-10993400	Weak transcription	Fetal Lung	lung
3	chr20:10988400-11015600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:10989000-10989800	Enhancers	HUVEC	blood vessel
5	chr20:10989000-10990000	Enhancers	Fetal Intestine Large	intestine
6	chr20:10989200-10989800	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr20:10989600-10989800	Enhancers	Duodenum Mucosa	Duodenum
8	chr20:10989600-10990000	Enhancers	Stomach Smooth Muscle	stomach
9	chr20:10989600-10994200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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