Variant report

Variant	rs17799974
Chromosome Location	chr20:10878985-10878986
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55999852	1.00[AMR][1000 genomes]
rs56323540	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074194	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074221	1.00[ASN][1000 genomes]
rs6074228	1.00[ASN][1000 genomes]
rs6077955	1.00[ASN][1000 genomes]
rs6078017	1.00[ASN][1000 genomes]
rs6078035	1.00[ASN][1000 genomes]
rs62185670	1.00[ASN][1000 genomes]
rs7262797	1.00[ASN][1000 genomes]
rs73086911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10876600-10879400	Enhancers	HMEC	breast
2	chr20:10877800-10879400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:10878600-10882600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr20:10878600-10882600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:10878600-10882600	Weak transcription	NHEK	skin
6	chr20:10878600-10883600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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