Variant report

Variant	rs55999852
Chromosome Location	chr20:10768954-10768955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:10763021..10764531-chr20:10768101..10770234,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17799974	1.00[AMR][1000 genomes]
rs56323540	1.00[AMR][1000 genomes]
rs73086186	0.90[EUR][1000 genomes]
rs73086911	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522874	chr20:9899439-10819210	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:10754600-10774200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:10764600-10774000	Weak transcription	Brain Germinal Matrix	brain
3	chr20:10765400-10770200	Weak transcription	Pancreas	Pancrea
4	chr20:10765400-10770400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr20:10765400-10770400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr20:10765400-10770400	Weak transcription	HMEC	breast
7	chr20:10765400-10770600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:10765400-10770600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr20:10765400-10774200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr20:10765400-10774200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr20:10765600-10774400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr20:10765800-10770200	Weak transcription	NHEK	skin
13	chr20:10765800-10770600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr20:10765800-10770800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr20:10765800-10770800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr20:10766800-10770200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr20:10767600-10770000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr20:10768400-10770600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr20:10768400-10774000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr20:10768800-10769000	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr20:10768800-10770400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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