Variant report

Variant	rs73899003
Chromosome Location	chr20:11454706-11454707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56128758	1.00[AFR][1000 genomes]
rs59337512	1.00[AFR][1000 genomes]
rs73896358	1.00[AFR][1000 genomes]
rs73896363	1.00[AFR][1000 genomes]
rs73899012	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11449000-11457800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:11453400-11455600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr20:11454000-11455800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr20:11454200-11455400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr20:11454400-11454800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:11454400-11455400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:11454600-11455000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr20:11454600-11455000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr20:11454600-11455000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr20:11454600-11455000	Enhancers	HSMM	muscle
11	chr20:11454600-11455200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr20:11454600-11455200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr20:11454600-11455200	Enhancers	NHEK	skin
14	chr20:11454600-11455200	Enhancers	Osteobl	bone
15	chr20:11454600-11455400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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