Variant report

Variant	rs73899012
Chromosome Location	chr20:11478176-11478177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56128758	1.00[AFR][1000 genomes]
rs59337512	1.00[AFR][1000 genomes]
rs73896358	1.00[AFR][1000 genomes]
rs73896363	1.00[AFR][1000 genomes]
rs73899003	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11472400-11478200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr20:11472400-11479600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:11474000-11479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:11474000-11479600	Weak transcription	HMEC	breast
5	chr20:11474000-11479600	Weak transcription	NHEK	skin
6	chr20:11476400-11481000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr20:11476800-11478200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr20:11477400-11478200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:11477400-11479400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:11477400-11485600	Weak transcription	A549	lung
11	chr20:11477600-11478200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr20:11477800-11479200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr20:11478000-11478600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr20:11478000-11478800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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