Variant report

Variant	rs73899945
Chromosome Location	chr20:22226774-22226775
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs58448256	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60077122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60085163	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899939	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899941	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899951	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73899961	0.85[AFR][1000 genomes]
rs73900400	1.00[AMR][1000 genomes]
rs73903804	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065067	chr20:22199617-22240462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22225200-22226800	Enhancers	HepG2	liver
2	chr20:22225400-22230800	Weak transcription	Dnd41	blood
3	chr20:22226400-22230800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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