Variant report

Variant	rs73900400
Chromosome Location	chr20:22034574-22034575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55692604	1.00[AMR][1000 genomes]
rs58448256	1.00[AMR][1000 genomes]
rs60057535	1.00[AMR][1000 genomes]
rs60077122	1.00[AMR][1000 genomes]
rs60085163	1.00[AMR][1000 genomes]
rs73899938	1.00[AMR][1000 genomes]
rs73899939	1.00[AMR][1000 genomes]
rs73899941	1.00[AMR][1000 genomes]
rs73899943	1.00[AMR][1000 genomes]
rs73899945	1.00[AMR][1000 genomes]
rs73900381	1.00[AMR][1000 genomes]
rs73900383	1.00[AMR][1000 genomes]
rs73900384	1.00[AMR][1000 genomes]
rs73903804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058137	chr20:21549350-22295051	Weak transcription Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv432114	chr20:22012900-22148200	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22029200-22038000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:22032800-22034800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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