Variant report

Variant	rs73900897
Chromosome Location	chr20:15943890-15943891
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56389305	1.00[EUR][1000 genomes]
rs56408850	1.00[EUR][1000 genomes]
rs60178135	1.00[EUR][1000 genomes]
rs61595016	1.00[EUR][1000 genomes]
rs73898597	1.00[EUR][1000 genomes]
rs73898598	1.00[EUR][1000 genomes]
rs73898600	1.00[EUR][1000 genomes]
rs73898601	1.00[EUR][1000 genomes]
rs73898602	1.00[EUR][1000 genomes]
rs73900803	1.00[EUR][1000 genomes]
rs73900805	1.00[EUR][1000 genomes]
rs73900806	1.00[EUR][1000 genomes]
rs73900807	1.00[EUR][1000 genomes]
rs73900808	1.00[EUR][1000 genomes]
rs73900809	1.00[EUR][1000 genomes]
rs73900810	1.00[EUR][1000 genomes]
rs73900811	1.00[EUR][1000 genomes]
rs73900833	1.00[EUR][1000 genomes]
rs73900841	1.00[EUR][1000 genomes]
rs73900889	1.00[EUR][1000 genomes]
rs73900890	1.00[EUR][1000 genomes]
rs73900894	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15923000-15951200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15939600-15947000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15942200-15944200	Weak transcription	Primary B cells from cord blood	blood
4	chr20:15942600-15944000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr20:15943000-15954600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links