Variant report

Variant	rs56408850
Chromosome Location	chr20:15888918-15888919
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16996862	1.00[AMR][1000 genomes]
rs56389305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60178135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61595016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73597725	1.00[AMR][1000 genomes]
rs73898597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898600	1.00[EUR][1000 genomes]
rs73898601	1.00[EUR][1000 genomes]
rs73898602	1.00[EUR][1000 genomes]
rs73900803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900805	1.00[EUR][1000 genomes]
rs73900806	1.00[EUR][1000 genomes]
rs73900807	1.00[EUR][1000 genomes]
rs73900808	1.00[EUR][1000 genomes]
rs73900809	1.00[EUR][1000 genomes]
rs73900810	1.00[EUR][1000 genomes]
rs73900811	1.00[EUR][1000 genomes]
rs73900833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900897	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15884400-15917400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:15886600-15889400	Weak transcription	Colon Smooth Muscle	Colon
3	chr20:15887000-15892800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:15887200-15889000	Strong transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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