Variant report
Variant | rs16996862 |
---|---|
Chromosome Location | chr20:15935216-15935217 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1012299 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs16996746 | 0.81[ASN][1000 genomes] |
rs16996757 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs16996802 | 1.00[ASN][1000 genomes] |
rs16996835 | 1.00[ASN][1000 genomes] |
rs16996850 | 1.00[ASN][1000 genomes] |
rs16996861 | 1.00[ASN][1000 genomes] |
rs16996864 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs175781 | 1.00[CEU][hapmap] |
rs56389305 | 1.00[AMR][1000 genomes] |
rs56408850 | 1.00[AMR][1000 genomes] |
rs60178135 | 1.00[AMR][1000 genomes] |
rs6034341 | 1.00[CEU][hapmap] |
rs6034351 | 1.00[CEU][hapmap] |
rs6043661 | 1.00[CEU][hapmap] |
rs6043664 | 1.00[CEU][hapmap] |
rs6043668 | 1.00[CEU][hapmap] |
rs6131766 | 1.00[CEU][hapmap] |
rs6135602 | 0.88[YRI][hapmap] |
rs6135629 | 1.00[CEU][hapmap] |
rs6135639 | 1.00[CEU][hapmap] |
rs6135645 | 1.00[CEU][hapmap] |
rs61595016 | 1.00[AMR][1000 genomes] |
rs73597703 | 0.81[ASN][1000 genomes] |
rs73597704 | 0.81[ASN][1000 genomes] |
rs73597706 | 0.81[ASN][1000 genomes] |
rs73597708 | 0.81[ASN][1000 genomes] |
rs73597709 | 0.81[ASN][1000 genomes] |
rs73597710 | 0.81[ASN][1000 genomes] |
rs73597711 | 0.81[ASN][1000 genomes] |
rs73597712 | 0.81[ASN][1000 genomes] |
rs73597713 | 0.81[ASN][1000 genomes] |
rs73597714 | 0.81[ASN][1000 genomes] |
rs73597715 | 0.81[ASN][1000 genomes] |
rs73597717 | 0.81[ASN][1000 genomes] |
rs73597718 | 0.81[ASN][1000 genomes] |
rs73597719 | 0.81[ASN][1000 genomes] |
rs73597720 | 1.00[ASN][1000 genomes] |
rs73597721 | 1.00[ASN][1000 genomes] |
rs73597722 | 1.00[ASN][1000 genomes] |
rs73597723 | 1.00[ASN][1000 genomes] |
rs73597724 | 1.00[ASN][1000 genomes] |
rs73597725 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73597726 | 1.00[ASN][1000 genomes] |
rs73597727 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73597728 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73597729 | 1.00[ASN][1000 genomes] |
rs73597730 | 0.93[ASN][1000 genomes] |
rs73597731 | 1.00[ASN][1000 genomes] |
rs73597732 | 1.00[ASN][1000 genomes] |
rs73597734 | 1.00[ASN][1000 genomes] |
rs73597735 | 1.00[ASN][1000 genomes] |
rs73597737 | 1.00[ASN][1000 genomes] |
rs73597738 | 1.00[ASN][1000 genomes] |
rs73597739 | 1.00[ASN][1000 genomes] |
rs73597741 | 1.00[ASN][1000 genomes] |
rs73597743 | 1.00[ASN][1000 genomes] |
rs73614472 | 0.81[ASN][1000 genomes] |
rs73614473 | 0.81[ASN][1000 genomes] |
rs73614474 | 0.81[ASN][1000 genomes] |
rs73614475 | 0.81[ASN][1000 genomes] |
rs73614476 | 0.81[ASN][1000 genomes] |
rs73614477 | 0.81[ASN][1000 genomes] |
rs73614479 | 0.81[ASN][1000 genomes] |
rs73614480 | 0.81[ASN][1000 genomes] |
rs73614481 | 0.81[ASN][1000 genomes] |
rs73614482 | 0.81[ASN][1000 genomes] |
rs73614483 | 0.81[ASN][1000 genomes] |
rs73614484 | 0.81[ASN][1000 genomes] |
rs73614485 | 0.81[ASN][1000 genomes] |
rs73614486 | 0.81[ASN][1000 genomes] |
rs73614487 | 0.81[ASN][1000 genomes] |
rs73898597 | 1.00[AMR][1000 genomes] |
rs73898598 | 1.00[AMR][1000 genomes] |
rs73900803 | 1.00[AMR][1000 genomes] |
rs73900833 | 1.00[AMR][1000 genomes] |
rs73900841 | 1.00[AMR][1000 genomes] |
rs73900889 | 1.00[AMR][1000 genomes] |
rs73900890 | 1.00[AMR][1000 genomes] |
rs73900894 | 1.00[AMR][1000 genomes] |
rs775102 | 1.00[CEU][hapmap] |
rs8124934 | 1.00[JPT][hapmap] |
rs957159 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15923000-15951200 | Weak transcription | Primary B cells from peripheral blood | blood |
2 | chr20:15924200-15938400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
3 | chr20:15931000-15937200 | Strong transcription | Primary B cells from cord blood | blood |