Variant report

Variant	rs16996757
Chromosome Location	chr20:15882409-15882410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:15750671..15752397-chr20:15882354..15885004,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1012299	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16996746	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16996802	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16996835	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16996850	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16996861	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16996862	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16996864	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6105487	1.00[GIH][hapmap]
rs6105498	1.00[GIH][hapmap]
rs6110823	0.82[CHB][hapmap]
rs7273939	1.00[EUR][1000 genomes]
rs73597703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597704	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597705	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73597706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597708	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597709	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597712	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597713	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597714	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597718	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597719	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73597720	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597721	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597722	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597723	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597724	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597725	0.81[ASN][1000 genomes]
rs73597726	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597727	0.81[ASN][1000 genomes]
rs73597728	0.81[ASN][1000 genomes]
rs73597729	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597731	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597732	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597733	1.00[EUR][1000 genomes]
rs73597734	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597735	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597737	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597738	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597739	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597741	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73597742	1.00[EUR][1000 genomes]
rs73597743	0.81[ASN][1000 genomes]
rs73614454	1.00[EUR][1000 genomes]
rs73614460	1.00[EUR][1000 genomes]
rs73614461	1.00[EUR][1000 genomes]
rs73614462	1.00[EUR][1000 genomes]
rs73614472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614473	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614475	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614480	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73614487	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8124934	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs957159	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15876400-15883200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:15881400-15885800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr20:15881600-15886000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr20:15882400-15882800	Strong transcription	Primary B cells from cord blood	blood

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