Variant report

Variant	rs73614454
Chromosome Location	chr20:15755052-15755053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs16996746	1.00[EUR][1000 genomes]
rs16996757	1.00[EUR][1000 genomes]
rs16996802	1.00[EUR][1000 genomes]
rs16996835	1.00[EUR][1000 genomes]
rs16996850	1.00[EUR][1000 genomes]
rs16996861	1.00[EUR][1000 genomes]
rs16996864	1.00[EUR][1000 genomes]
rs7273939	1.00[EUR][1000 genomes]
rs73597703	1.00[EUR][1000 genomes]
rs73597704	1.00[EUR][1000 genomes]
rs73597705	1.00[EUR][1000 genomes]
rs73597706	1.00[EUR][1000 genomes]
rs73597708	1.00[EUR][1000 genomes]
rs73597709	1.00[EUR][1000 genomes]
rs73597710	1.00[EUR][1000 genomes]
rs73597711	1.00[EUR][1000 genomes]
rs73597712	1.00[EUR][1000 genomes]
rs73597713	1.00[EUR][1000 genomes]
rs73597714	1.00[EUR][1000 genomes]
rs73597715	1.00[EUR][1000 genomes]
rs73597717	1.00[EUR][1000 genomes]
rs73597718	1.00[EUR][1000 genomes]
rs73597719	1.00[EUR][1000 genomes]
rs73597720	1.00[EUR][1000 genomes]
rs73597721	1.00[EUR][1000 genomes]
rs73597722	1.00[EUR][1000 genomes]
rs73597723	1.00[EUR][1000 genomes]
rs73597724	1.00[EUR][1000 genomes]
rs73597726	1.00[EUR][1000 genomes]
rs73597729	1.00[EUR][1000 genomes]
rs73614460	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73614461	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73614462	1.00[EUR][1000 genomes]
rs73614472	1.00[EUR][1000 genomes]
rs73614473	1.00[EUR][1000 genomes]
rs73614474	1.00[EUR][1000 genomes]
rs73614475	1.00[EUR][1000 genomes]
rs73614476	1.00[EUR][1000 genomes]
rs73614477	1.00[EUR][1000 genomes]
rs73614479	1.00[EUR][1000 genomes]
rs73614480	1.00[EUR][1000 genomes]
rs73614481	1.00[EUR][1000 genomes]
rs73614482	1.00[EUR][1000 genomes]
rs73614483	1.00[EUR][1000 genomes]
rs73614484	1.00[EUR][1000 genomes]
rs73614485	1.00[EUR][1000 genomes]
rs73614486	1.00[EUR][1000 genomes]
rs73614487	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833928	chr20:15619962-15780758	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912791	chr20:15702037-15759361	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv458934	chr20:15738086-15772582	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv585641	chr20:15738086-15772582	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv585642	chr20:15738086-15772876	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15754200-15755400	Enhancers	Placenta Amnion	Placenta Amnion
2	chr20:15754400-15755400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr20:15754600-15755200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr20:15754600-15755400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr20:15754800-15755400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr20:15755000-15755200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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