Variant report
Variant | rs73614460 |
---|---|
Chromosome Location | chr20:15796978-15796979 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:15784951..15787296-chr20:15795585..15797238,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs16996746 | 1.00[EUR][1000 genomes] |
rs16996757 | 1.00[EUR][1000 genomes] |
rs16996802 | 1.00[EUR][1000 genomes] |
rs16996835 | 1.00[EUR][1000 genomes] |
rs16996850 | 1.00[EUR][1000 genomes] |
rs16996861 | 1.00[EUR][1000 genomes] |
rs16996864 | 1.00[EUR][1000 genomes] |
rs7273939 | 1.00[EUR][1000 genomes] |
rs73597703 | 1.00[EUR][1000 genomes] |
rs73597704 | 1.00[EUR][1000 genomes] |
rs73597705 | 1.00[EUR][1000 genomes] |
rs73597706 | 1.00[EUR][1000 genomes] |
rs73597708 | 1.00[EUR][1000 genomes] |
rs73597709 | 1.00[EUR][1000 genomes] |
rs73597710 | 1.00[EUR][1000 genomes] |
rs73597711 | 1.00[EUR][1000 genomes] |
rs73597712 | 1.00[EUR][1000 genomes] |
rs73597713 | 1.00[EUR][1000 genomes] |
rs73597714 | 1.00[EUR][1000 genomes] |
rs73597715 | 1.00[EUR][1000 genomes] |
rs73597717 | 1.00[EUR][1000 genomes] |
rs73597718 | 1.00[EUR][1000 genomes] |
rs73597719 | 1.00[EUR][1000 genomes] |
rs73597720 | 1.00[EUR][1000 genomes] |
rs73597721 | 1.00[EUR][1000 genomes] |
rs73597722 | 1.00[EUR][1000 genomes] |
rs73597723 | 1.00[EUR][1000 genomes] |
rs73597724 | 1.00[EUR][1000 genomes] |
rs73597726 | 1.00[EUR][1000 genomes] |
rs73597729 | 1.00[EUR][1000 genomes] |
rs73597731 | 1.00[EUR][1000 genomes] |
rs73597732 | 1.00[EUR][1000 genomes] |
rs73597733 | 1.00[EUR][1000 genomes] |
rs73597734 | 1.00[EUR][1000 genomes] |
rs73597735 | 1.00[EUR][1000 genomes] |
rs73597737 | 1.00[EUR][1000 genomes] |
rs73597738 | 1.00[EUR][1000 genomes] |
rs73597739 | 1.00[EUR][1000 genomes] |
rs73597741 | 1.00[EUR][1000 genomes] |
rs73597742 | 1.00[EUR][1000 genomes] |
rs73614454 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs73614461 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs73614462 | 1.00[EUR][1000 genomes] |
rs73614472 | 1.00[EUR][1000 genomes] |
rs73614473 | 1.00[EUR][1000 genomes] |
rs73614474 | 1.00[EUR][1000 genomes] |
rs73614475 | 1.00[EUR][1000 genomes] |
rs73614476 | 1.00[EUR][1000 genomes] |
rs73614477 | 1.00[EUR][1000 genomes] |
rs73614479 | 1.00[EUR][1000 genomes] |
rs73614480 | 1.00[EUR][1000 genomes] |
rs73614481 | 1.00[EUR][1000 genomes] |
rs73614482 | 1.00[EUR][1000 genomes] |
rs73614483 | 1.00[EUR][1000 genomes] |
rs73614484 | 1.00[EUR][1000 genomes] |
rs73614485 | 1.00[EUR][1000 genomes] |
rs73614486 | 1.00[EUR][1000 genomes] |
rs73614487 | 1.00[EUR][1000 genomes] |
rs8124934 | 1.00[EUR][1000 genomes] |
rs957159 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv912793 | chr20:15760969-15807441 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv1847965 | chr20:15766727-15807441 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv585644 | chr20:15766727-15807441 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | esv2754713 | chr20:15785800-15816800 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv585645 | chr20:15796051-15817106 | Enhancers Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv458935 | chr20:15796658-15816595 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | nsv585646 | chr20:15796658-15816595 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15790200-15799000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
2 | chr20:15796000-15798200 | Weak transcription | HSMMtube | muscle |
3 | chr20:15796000-15799000 | Weak transcription | Liver | Liver |
4 | chr20:15796200-15798000 | Weak transcription | HSMM | muscle |
5 | chr20:15796400-15798400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
6 | chr20:15796800-15797600 | Enhancers | Placenta Amnion | Placenta Amnion |