Variant report

Variant	rs1012299
Chromosome Location	chr20:15930022-15930023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1012298	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs16996746	0.81[ASN][1000 genomes]
rs16996757	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16996802	1.00[ASN][1000 genomes]
rs16996835	1.00[ASN][1000 genomes]
rs16996850	1.00[ASN][1000 genomes]
rs16996861	1.00[ASN][1000 genomes]
rs16996862	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16996864	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6034325	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6135645	1.00[CEU][hapmap]
rs719951	1.00[CEU][hapmap]
rs73597703	0.81[ASN][1000 genomes]
rs73597704	0.81[ASN][1000 genomes]
rs73597706	0.81[ASN][1000 genomes]
rs73597708	0.81[ASN][1000 genomes]
rs73597709	0.81[ASN][1000 genomes]
rs73597710	0.81[ASN][1000 genomes]
rs73597711	0.81[ASN][1000 genomes]
rs73597712	0.81[ASN][1000 genomes]
rs73597713	0.81[ASN][1000 genomes]
rs73597714	0.81[ASN][1000 genomes]
rs73597715	0.81[ASN][1000 genomes]
rs73597717	0.81[ASN][1000 genomes]
rs73597718	0.81[ASN][1000 genomes]
rs73597719	0.81[ASN][1000 genomes]
rs73597720	1.00[ASN][1000 genomes]
rs73597721	1.00[ASN][1000 genomes]
rs73597722	1.00[ASN][1000 genomes]
rs73597723	1.00[ASN][1000 genomes]
rs73597724	1.00[ASN][1000 genomes]
rs73597725	1.00[ASN][1000 genomes]
rs73597726	1.00[ASN][1000 genomes]
rs73597727	1.00[ASN][1000 genomes]
rs73597728	1.00[ASN][1000 genomes]
rs73597729	1.00[ASN][1000 genomes]
rs73597730	0.93[ASN][1000 genomes]
rs73597731	1.00[ASN][1000 genomes]
rs73597732	1.00[ASN][1000 genomes]
rs73597734	1.00[ASN][1000 genomes]
rs73597735	1.00[ASN][1000 genomes]
rs73597737	1.00[ASN][1000 genomes]
rs73597738	1.00[ASN][1000 genomes]
rs73597739	1.00[ASN][1000 genomes]
rs73597741	1.00[ASN][1000 genomes]
rs73597743	1.00[ASN][1000 genomes]
rs73614472	0.81[ASN][1000 genomes]
rs73614473	0.81[ASN][1000 genomes]
rs73614474	0.81[ASN][1000 genomes]
rs73614475	0.81[ASN][1000 genomes]
rs73614476	0.81[ASN][1000 genomes]
rs73614477	0.81[ASN][1000 genomes]
rs73614479	0.81[ASN][1000 genomes]
rs73614480	0.81[ASN][1000 genomes]
rs73614481	0.81[ASN][1000 genomes]
rs73614482	0.81[ASN][1000 genomes]
rs73614483	0.81[ASN][1000 genomes]
rs73614484	0.81[ASN][1000 genomes]
rs73614485	0.81[ASN][1000 genomes]
rs73614486	0.81[ASN][1000 genomes]
rs73614487	0.81[ASN][1000 genomes]
rs8124934	1.00[JPT][hapmap]
rs957159	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15912000-15930200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:15923000-15951200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr20:15923200-15930200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr20:15924200-15930200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:15924200-15930200	Weak transcription	Hela-S3	cervix
6	chr20:15924200-15938400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:15926800-15931000	Weak transcription	Primary B cells from cord blood	blood
8	chr20:15928800-15930400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr20:15929000-15930600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr20:15929200-15930400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr20:15929200-15930600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr20:15929400-15930600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr20:15929600-15930200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr20:15929600-15930400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr20:15929600-15931400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr20:15930000-15930400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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