Variant report

Variant	rs6135645
Chromosome Location	chr20:16008912-16008913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9400389..9401174-chr20:16008735..16009312,2	MCF-7	breast:
2	chr20:15994327..15996069-chr20:16007879..16009876,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1012299	1.00[CEU][hapmap]
rs16996862	1.00[CEU][hapmap]
rs175781	1.00[CEU][hapmap]
rs59705966	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6034325	1.00[CEU][hapmap]
rs6034341	1.00[CEU][hapmap]
rs6034348	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6034349	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6034351	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043661	1.00[CEU][hapmap]
rs6043664	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043668	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6043670	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6131761	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6131766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6135629	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6135639	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6135707	1.00[CEU][hapmap]
rs719951	1.00[CEU][hapmap]
rs775102	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1065548	chr20:15971797-16023086	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv585649	chr20:16004320-16066764	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1061301	chr20:16007489-16097070	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15998400-16012000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:16005200-16009800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr20:16007000-16009400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr20:16007200-16009200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr20:16007200-16009400	Enhancers	Brain Germinal Matrix	brain
6	chr20:16007400-16009200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:16007600-16009000	Enhancers	Fetal Brain Male	brain
8	chr20:16007600-16009200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:16007600-16009200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr20:16007600-16009200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr20:16007600-16009400	Enhancers	Primary B cells from cord blood	blood
12	chr20:16007600-16009800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr20:16007800-16009000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr20:16007800-16009200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr20:16007800-16009200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr20:16008400-16009000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr20:16008400-16009000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr20:16008400-16009200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr20:16008600-16009000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr20:16008800-16011400	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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