Variant report

Variant	rs6131766
Chromosome Location	chr20:16006861-16006862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16996862	1.00[CEU][hapmap]
rs175781	1.00[CEU][hapmap]
rs59705966	0.95[ASN][1000 genomes]
rs6034341	1.00[CEU][hapmap]
rs6034348	1.00[EUR][1000 genomes]
rs6034349	0.93[ASN][1000 genomes]
rs6034351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6043661	1.00[CEU][hapmap]
rs6043664	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6043668	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6043670	0.93[ASN][1000 genomes]
rs6131761	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs6135629	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6135639	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs6135645	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6135707	1.00[CEU][hapmap]
rs775102	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1065548	chr20:15971797-16023086	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv585649	chr20:16004320-16066764	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15998400-16012000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:16003600-16007800	Weak transcription	Fetal Brain Female	brain
3	chr20:16004200-16008800	Enhancers	Primary B cells from peripheral blood	blood
4	chr20:16004600-16007200	Weak transcription	Brain Germinal Matrix	brain
5	chr20:16004800-16007800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr20:16005000-16008600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr20:16005200-16009800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr20:16005400-16007600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr20:16006200-16007000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:16006200-16007200	Weak transcription	Primary B cells from cord blood	blood
11	chr20:16006200-16007600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:16006400-16007200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr20:16006400-16007400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr20:16006400-16008000	Weak transcription	HSMM	muscle
15	chr20:16006400-16008400	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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