Variant report

Variant	rs6034348
Chromosome Location	chr20:15984804-15984805
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59705966	0.83[AMR][1000 genomes]
rs6034349	0.83[AMR][1000 genomes]
rs6034351	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043664	1.00[EUR][1000 genomes]
rs6043668	0.83[AMR][1000 genomes]
rs6043670	0.83[AMR][1000 genomes]
rs6131761	0.83[AMR][1000 genomes]
rs6131766	1.00[EUR][1000 genomes]
rs6135629	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6135639	0.83[AMR][1000 genomes]
rs6135645	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1065548	chr20:15971797-16023086	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15959000-15985400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:15979000-15985600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr20:15979000-16004200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr20:15982800-15988600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr20:15983600-15987400	Weak transcription	Primary B cells from cord blood	blood
6	chr20:15984000-15986600	Enhancers	Fetal Heart	heart
7	chr20:15984000-15989200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr20:15984600-15985000	Enhancers	Gastric	stomach
9	chr20:15984600-15985200	Enhancers	Ovary	ovary
10	chr20:15984600-15985600	Enhancers	Left Ventricle	heart
11	chr20:15984600-15987400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr20:15984600-15987800	Enhancers	Primary hematopoietic stem cells	blood
13	chr20:15984600-15987800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr20:15984800-15985000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr20:15984800-15985400	Enhancers	Right Ventricle	heart
16	chr20:15984800-15985400	Enhancers	Stomach Mucosa	stomach
17	chr20:15984800-15986200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr20:15984800-15986200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr20:15984800-15987600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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