Variant report

Variant	rs175781
Chromosome Location	chr20:15886294-15886295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16996862	1.00[CEU][hapmap]
rs16996904	1.00[TSI][hapmap]
rs175785	1.00[ASW][hapmap];1.00[TSI][hapmap]
rs4814410	1.00[TSI][hapmap]
rs6034341	1.00[CEU][hapmap]
rs6034351	1.00[CEU][hapmap]
rs6043661	1.00[CEU][hapmap]
rs6043662	1.00[TSI][hapmap]
rs6043664	1.00[CEU][hapmap]
rs6043668	1.00[CEU][hapmap]
rs6131766	1.00[CEU][hapmap]
rs6135629	1.00[CEU][hapmap]
rs6135639	1.00[CEU][hapmap]
rs6135645	1.00[CEU][hapmap]
rs708979	1.00[TSI][hapmap]
rs775102	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15882800-15887200	Weak transcription	Primary B cells from cord blood	blood
2	chr20:15884400-15917400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15885800-15887000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr20:15886000-15886400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr20:15886000-15886600	Enhancers	Colon Smooth Muscle	Colon
6	chr20:15886200-15886600	Enhancers	Fetal Heart	heart
7	chr20:15886200-15887000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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