Variant report

Variant	rs73597743
Chromosome Location	chr20:15957771-15957772
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1012299	1.00[ASN][1000 genomes]
rs16996746	0.81[ASN][1000 genomes]
rs16996757	0.81[ASN][1000 genomes]
rs16996802	1.00[ASN][1000 genomes]
rs16996835	1.00[ASN][1000 genomes]
rs16996850	1.00[ASN][1000 genomes]
rs16996861	1.00[ASN][1000 genomes]
rs16996862	1.00[ASN][1000 genomes]
rs16996864	1.00[ASN][1000 genomes]
rs73597703	0.81[ASN][1000 genomes]
rs73597704	0.81[ASN][1000 genomes]
rs73597706	0.81[ASN][1000 genomes]
rs73597708	0.81[ASN][1000 genomes]
rs73597709	0.81[ASN][1000 genomes]
rs73597710	0.81[ASN][1000 genomes]
rs73597711	0.81[ASN][1000 genomes]
rs73597712	0.81[ASN][1000 genomes]
rs73597713	0.81[ASN][1000 genomes]
rs73597714	0.81[ASN][1000 genomes]
rs73597715	0.81[ASN][1000 genomes]
rs73597717	0.81[ASN][1000 genomes]
rs73597718	0.81[ASN][1000 genomes]
rs73597719	0.81[ASN][1000 genomes]
rs73597720	1.00[ASN][1000 genomes]
rs73597721	1.00[ASN][1000 genomes]
rs73597722	1.00[ASN][1000 genomes]
rs73597723	1.00[ASN][1000 genomes]
rs73597724	1.00[ASN][1000 genomes]
rs73597725	1.00[ASN][1000 genomes]
rs73597726	1.00[ASN][1000 genomes]
rs73597727	1.00[ASN][1000 genomes]
rs73597728	1.00[ASN][1000 genomes]
rs73597729	1.00[ASN][1000 genomes]
rs73597730	0.93[ASN][1000 genomes]
rs73597731	1.00[ASN][1000 genomes]
rs73597732	1.00[ASN][1000 genomes]
rs73597734	1.00[ASN][1000 genomes]
rs73597735	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73597737	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73597738	1.00[ASN][1000 genomes]
rs73597739	1.00[ASN][1000 genomes]
rs73597741	1.00[ASN][1000 genomes]
rs73614472	0.81[ASN][1000 genomes]
rs73614473	0.81[ASN][1000 genomes]
rs73614474	0.81[ASN][1000 genomes]
rs73614475	0.81[ASN][1000 genomes]
rs73614476	0.81[ASN][1000 genomes]
rs73614477	0.81[ASN][1000 genomes]
rs73614479	0.81[ASN][1000 genomes]
rs73614480	0.81[ASN][1000 genomes]
rs73614481	0.81[ASN][1000 genomes]
rs73614482	0.81[ASN][1000 genomes]
rs73614483	0.81[ASN][1000 genomes]
rs73614484	0.81[ASN][1000 genomes]
rs73614485	0.81[ASN][1000 genomes]
rs73614486	0.81[ASN][1000 genomes]
rs73614487	0.81[ASN][1000 genomes]
rs957159	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15953000-15959800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15954600-15959200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr20:15954800-15958800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr20:15955000-15957800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:15956000-15957800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr20:15956400-15957800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr20:15956600-15958800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr20:15956800-15957800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr20:15956800-15958000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr20:15956800-15958400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr20:15956800-15959200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:15957000-15959200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr20:15957200-15957800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr20:15957200-15959400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr20:15957400-15957800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr20:15957400-15958400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr20:15957400-15958800	Strong transcription	Primary B cells from cord blood	blood
18	chr20:15957600-15958000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr20:15957600-15958400	Weak transcription	GM12878-XiMat	blood
20	chr20:15957600-15959000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr20:15957600-15959600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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