Variant report

Variant	rs73901245
Chromosome Location	chr20:14381417-14381418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1028813	1.00[EUR][1000 genomes]
rs11906789	1.00[EUR][1000 genomes]
rs11907024	1.00[EUR][1000 genomes]
rs55690549	1.00[EUR][1000 genomes]
rs55935507	1.00[EUR][1000 genomes]
rs57192436	1.00[EUR][1000 genomes]
rs58584977	1.00[EUR][1000 genomes]
rs6042782	1.00[EUR][1000 genomes]
rs6042783	1.00[EUR][1000 genomes]
rs6042819	1.00[EUR][1000 genomes]
rs73899205	1.00[EUR][1000 genomes]
rs73899206	1.00[EUR][1000 genomes]
rs73899208	1.00[EUR][1000 genomes]
rs73899215	1.00[EUR][1000 genomes]
rs73901221	1.00[EUR][1000 genomes]
rs73901233	1.00[EUR][1000 genomes]
rs73901237	1.00[EUR][1000 genomes]
rs73901246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73901247	1.00[EUR][1000 genomes]
rs73901248	1.00[EUR][1000 genomes]
rs73901249	1.00[EUR][1000 genomes]
rs73901254	1.00[EUR][1000 genomes]
rs73901255	1.00[EUR][1000 genomes]
rs73901270	1.00[EUR][1000 genomes]
rs73901272	1.00[EUR][1000 genomes]
rs73901273	1.00[EUR][1000 genomes]
rs73901274	1.00[EUR][1000 genomes]
rs73901278	1.00[EUR][1000 genomes]
rs73901281	1.00[EUR][1000 genomes]
rs73901282	1.00[EUR][1000 genomes]
rs73901890	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1057486	chr20:14077828-14469129	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1066235	chr20:14173771-14389050	Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1055499	chr20:14224873-14848061	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1061705	chr20:14330029-14430604	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1062079	chr20:14334350-14429820	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1063787	chr20:14341199-14408090	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv585440	chr20:14352394-14457834	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1063733	chr20:14357857-14459453	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv585441	chr20:14374573-14455497	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14365400-14387000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:14380800-14382200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:14381000-14384000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:14381200-14384200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr20:14381400-14381600	Enhancers	Brain Germinal Matrix	brain
6	chr20:14381400-14382600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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