Variant report

Variant	rs73901247
Chromosome Location	chr20:14395315-14395316
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1028813	1.00[EUR][1000 genomes]
rs11906789	1.00[EUR][1000 genomes]
rs11907024	1.00[EUR][1000 genomes]
rs55690549	1.00[EUR][1000 genomes]
rs55935507	1.00[EUR][1000 genomes]
rs57192436	1.00[EUR][1000 genomes]
rs58584977	1.00[EUR][1000 genomes]
rs59457302	0.84[AFR][1000 genomes]
rs6042782	1.00[EUR][1000 genomes]
rs6042783	1.00[EUR][1000 genomes]
rs6042819	1.00[EUR][1000 genomes]
rs73899205	1.00[EUR][1000 genomes]
rs73899206	1.00[EUR][1000 genomes]
rs73899208	1.00[EUR][1000 genomes]
rs73899215	1.00[EUR][1000 genomes]
rs73899216	1.00[EUR][1000 genomes]
rs73901221	1.00[EUR][1000 genomes]
rs73901233	1.00[EUR][1000 genomes]
rs73901237	1.00[EUR][1000 genomes]
rs73901245	1.00[EUR][1000 genomes]
rs73901246	1.00[EUR][1000 genomes]
rs73901248	1.00[EUR][1000 genomes]
rs73901249	1.00[EUR][1000 genomes]
rs73901254	1.00[EUR][1000 genomes]
rs73901255	1.00[EUR][1000 genomes]
rs73901270	1.00[EUR][1000 genomes]
rs73901272	1.00[EUR][1000 genomes]
rs73901273	1.00[EUR][1000 genomes]
rs73901274	1.00[EUR][1000 genomes]
rs73901278	1.00[EUR][1000 genomes]
rs73901281	1.00[EUR][1000 genomes]
rs73901282	1.00[EUR][1000 genomes]
rs73901890	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1057486	chr20:14077828-14469129	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1055499	chr20:14224873-14848061	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1061705	chr20:14330029-14430604	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1062079	chr20:14334350-14429820	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1063787	chr20:14341199-14408090	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv585440	chr20:14352394-14457834	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1063733	chr20:14357857-14459453	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv585441	chr20:14374573-14455497	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1064721	chr20:14384931-14648223	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14388400-14396000	Weak transcription	HSMMtube	muscle
2	chr20:14389200-14396200	Weak transcription	A549	lung
3	chr20:14391600-14397400	Weak transcription	Small Intestine	intestine
4	chr20:14393600-14396000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:14393800-14396200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr20:14393800-14398600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:14394200-14396000	Enhancers	Fetal Intestine Large	intestine
8	chr20:14394200-14396200	Enhancers	Liver	Liver
9	chr20:14394200-14396400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr20:14394400-14395800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr20:14394400-14396200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr20:14394400-14398600	Enhancers	Fetal Intestine Small	intestine
13	chr20:14394600-14396600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr20:14394600-14396600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr20:14394800-14395400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr20:14394800-14396000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr20:14395000-14395600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr20:14395000-14395600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr20:14395000-14395800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr20:14395000-14396600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr20:14395200-14396200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr20:14395200-14396400	Enhancers	Duodenum Mucosa	Duodenum

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