Variant report

Variant	rs73901573
Chromosome Location	chr20:23023193-23023194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23020985..23023221-chr20:23027756..23029605,2	MCF-7	breast:
2	chr20:23021523..23024307-chr20:23024511..23026678,2	MCF-7	breast:
3	chr20:22979981..22982770-chr20:23022858..23025459,2	MCF-7	breast:
4	chr20:23022684..23024263-chr20:23328966..23331361,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3176124	1.00[EUR][1000 genomes]
rs58335172	1.00[AFR][1000 genomes]
rs73901575	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23016000-23026000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:23016200-23028200	Weak transcription	Aorta	Aorta
3	chr20:23016600-23023600	Weak transcription	Gastric	stomach
4	chr20:23017600-23024600	Weak transcription	Spleen	Spleen
5	chr20:23020800-23026400	Weak transcription	A549	lung
6	chr20:23021000-23023600	Weak transcription	Esophagus	oesophagus
7	chr20:23021000-23026800	Weak transcription	HMEC	breast
8	chr20:23021400-23025200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr20:23021600-23026400	Weak transcription	Lung	lung
10	chr20:23021600-23027000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr20:23022200-23023800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
12	chr20:23022200-23024200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr20:23022400-23023600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr20:23022400-23024800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr20:23022600-23023400	Enhancers	Fetal Heart	heart
16	chr20:23022600-23024000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr20:23022600-23024000	Enhancers	Brain Germinal Matrix	brain
18	chr20:23022600-23024800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr20:23022600-23025000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr20:23022800-23023200	Bivalent Enhancer	Fetal Lung	lung
21	chr20:23022800-23023600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr20:23022800-23023800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
23	chr20:23022800-23024200	Weak transcription	Right Atrium	heart
24	chr20:23023000-23023200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
25	chr20:23023000-23023200	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr20:23023000-23023400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr20:23023000-23024000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr20:23023000-23024800	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links