Variant report

Variant	rs73901989
Chromosome Location	chr20:24359461-24359462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55910563	0.83[AFR][1000 genomes]
rs58041415	0.83[AFR][1000 genomes]
rs58291772	0.91[AFR][1000 genomes]
rs58993656	0.83[AFR][1000 genomes]
rs59099280	0.91[AFR][1000 genomes]
rs60420651	0.83[AFR][1000 genomes]
rs61500866	1.00[AFR][1000 genomes]
rs73901832	0.83[AFR][1000 genomes]
rs73901994	0.83[AFR][1000 genomes]
rs73902000	0.83[AFR][1000 genomes]
rs73904205	0.83[AFR][1000 genomes]
rs73904215	0.83[AFR][1000 genomes]
rs73904224	0.83[AFR][1000 genomes]
rs73904226	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24349200-24360000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:24356800-24360000	Weak transcription	Fetal Heart	heart
3	chr20:24357400-24360000	Weak transcription	Fetal Stomach	stomach
4	chr20:24357400-24360000	Weak transcription	NHLF	lung
5	chr20:24357600-24360400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr20:24357800-24359600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:24357800-24359800	Weak transcription	Colon Smooth Muscle	Colon
8	chr20:24357800-24359800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr20:24357800-24360000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr20:24357800-24362800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr20:24358000-24359600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr20:24358000-24359800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr20:24358000-24362400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr20:24358000-24362800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr20:24358800-24360000	Enhancers	Fetal Brain Male	brain
16	chr20:24359000-24363200	Enhancers	Brain Germinal Matrix	brain
17	chr20:24359400-24359800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr20:24359400-24359800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr20:24359400-24360000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr20:24359400-24360600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr20:24359400-24360600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr20:24359400-24360600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr20:24359400-24360600	Enhancers	Fetal Lung	lung
24	chr20:24359400-24360600	Enhancers	Fetal Muscle Trunk	muscle
25	chr20:24359400-24360600	Enhancers	NH-A	brain
26	chr20:24359400-24361600	Enhancers	Fetal Muscle Leg	muscle

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