Variant report

Variant	rs73904224
Chromosome Location	chr20:24422827-24422828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58041415	0.84[AFR][1000 genomes]
rs58291772	0.91[AFR][1000 genomes]
rs59099280	0.91[AFR][1000 genomes]
rs61500866	0.83[AFR][1000 genomes]
rs73901832	0.84[AFR][1000 genomes]
rs73901989	0.83[AFR][1000 genomes]
rs73904205	0.84[AFR][1000 genomes]
rs73904215	1.00[AFR][1000 genomes]
rs73904226	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv515713	chr20:24410195-24425987	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv458954	chr20:24410195-24431225	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv585733	chr20:24410195-24431225	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1850507	chr20:24411854-24424386	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv442483	chr20:24418791-24424700	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24412400-24423400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24412600-24423600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:24421600-24423000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr20:24421800-24423000	Enhancers	Brain Cingulate Gyrus	brain
5	chr20:24421800-24423000	Enhancers	Brain Hippocampus Middle	brain
6	chr20:24422000-24423000	Enhancers	Brain Anterior Caudate	brain
7	chr20:24422000-24423000	Enhancers	Brain Substantia Nigra	brain
8	chr20:24422200-24423000	Enhancers	Fetal Brain Female	brain
9	chr20:24422800-24423000	Weak transcription	Spleen	Spleen
10	chr20:24422800-24426000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr20:24422800-24426200	Weak transcription	Brain Angular Gyrus	brain
12	chr20:24422800-24426600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr20:24422800-24426600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr20:24422800-24426600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr20:24422800-24426800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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