Variant report

Variant	rs73902891
Chromosome Location	chr20:22533988-22533989
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55663904	0.95[AFR][1000 genomes]
rs55789916	1.00[AFR][1000 genomes]
rs58225430	1.00[AFR][1000 genomes]
rs61590736	1.00[AFR][1000 genomes]
rs73900529	1.00[AMR][1000 genomes]
rs73902880	1.00[AFR][1000 genomes]
rs73902892	1.00[AFR][1000 genomes]
rs73902897	1.00[AFR][1000 genomes]
rs73902898	1.00[AFR][1000 genomes]
rs73902900	1.00[AFR][1000 genomes]
rs73902901	1.00[AFR][1000 genomes]
rs73902902	1.00[AFR][1000 genomes]
rs73904103	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73904105	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73904107	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22515000-22544200	Weak transcription	Pancreas	Pancrea
2	chr20:22529000-22536800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22530400-22536800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:22533200-22534000	Bivalent Enhancer	HepG2	liver
5	chr20:22533800-22534000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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