Variant report

Variant	rs73904105
Chromosome Location	chr20:22546261-22546262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55663904	1.00[AFR][1000 genomes]
rs55789916	0.95[AFR][1000 genomes]
rs58225430	0.95[AFR][1000 genomes]
rs61590736	0.95[AFR][1000 genomes]
rs73900529	1.00[AMR][1000 genomes]
rs73902880	0.95[AFR][1000 genomes]
rs73902891	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902892	0.95[AFR][1000 genomes]
rs73902897	0.95[AFR][1000 genomes]
rs73902898	0.95[AFR][1000 genomes]
rs73902900	0.95[AFR][1000 genomes]
rs73902901	0.95[AFR][1000 genomes]
rs73902902	0.95[AFR][1000 genomes]
rs73904103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73904107	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22540000-22548800	Weak transcription	Gastric	stomach
2	chr20:22543200-22548000	Weak transcription	K562	blood
3	chr20:22543600-22547800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr20:22544200-22547000	Genic enhancers	HepG2	liver
5	chr20:22544400-22546400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:22544400-22548000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr20:22544600-22549400	Genic enhancers	Liver	Liver
8	chr20:22545200-22547800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr20:22545600-22548600	Weak transcription	Pancreas	Pancrea
10	chr20:22546000-22546400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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