Variant report

Variant	rs73921231
Chromosome Location	chr2:21741564-21741565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55828438	0.83[AFR][1000 genomes]
rs61136687	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73919301	1.00[AMR][1000 genomes]
rs73921226	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73921240	1.00[AFR][1000 genomes]
rs73921248	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21741200-21743400	Enhancers	Brain Germinal Matrix	brain
2	chr2:21741400-21742400	Enhancers	Fetal Brain Male	brain
3	chr2:21741400-21742600	Enhancers	Ovary	ovary
4	chr2:21741400-21743000	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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