Variant report

Variant	rs73921579
Chromosome Location	chr2:31416982-31416983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1443717	0.83[EUR][1000 genomes]
rs17010751	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17010752	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56404374	1.00[AFR][1000 genomes]
rs57748606	1.00[AFR][1000 genomes]
rs61545713	0.83[AFR][1000 genomes]
rs6751477	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733501	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73921552	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73921575	0.83[AFR][1000 genomes]
rs73921578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73921580	1.00[AFR][1000 genomes]
rs73921581	1.00[AFR][1000 genomes]
rs73921582	1.00[AFR][1000 genomes]
rs73921583	1.00[AFR][1000 genomes]
rs73921584	1.00[AFR][1000 genomes]
rs73921587	1.00[AFR][1000 genomes]
rs73921589	1.00[AFR][1000 genomes]
rs73921591	1.00[AFR][1000 genomes]
rs73921592	1.00[AFR][1000 genomes]
rs73921593	1.00[AFR][1000 genomes]
rs73921597	1.00[AFR][1000 genomes]
rs73921598	1.00[AFR][1000 genomes]
rs745524	1.00[ASN][1000 genomes]
rs750185	1.00[ASN][1000 genomes]
rs7607657	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv873772	chr2:31363732-31417863	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv873773	chr2:31363732-31426449	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv873774	chr2:31363732-31432367	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv873775	chr2:31363732-31439443	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv873776	chr2:31384009-31439443	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv997652	chr2:31385242-31431588	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv535611	chr2:31385242-31431588	ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31391200-31418600	Weak transcription	Gastric	stomach
2	chr2:31394800-31419600	Weak transcription	Primary B cells from cord blood	blood
3	chr2:31410800-31420400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:31411000-31421800	Weak transcription	Primary T cells from cord blood	blood
5	chr2:31411000-31427400	Weak transcription	Fetal Brain Female	brain
6	chr2:31411200-31436800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:31413200-31417400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:31413400-31425600	Weak transcription	Right Ventricle	heart
9	chr2:31415000-31418200	Strong transcription	Esophagus	oesophagus
10	chr2:31415400-31417000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:31415400-31417200	Enhancers	Fetal Intestine Large	intestine
12	chr2:31415400-31420800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:31416600-31417400	Enhancers	Primary B cells from peripheral blood	blood
14	chr2:31416800-31419400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links