Variant report

Variant	rs73927043
Chromosome Location	chr2:39921729-39921730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
TMEM178A	TF binding region
ENSG00000231312	Chromatin interaction
ENSG00000152154	Chromatin interaction
ENSG00000011566	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17024197	1.00[ASN][1000 genomes]
rs17024202	1.00[ASN][1000 genomes]
rs17024218	1.00[ASN][1000 genomes]
rs17024232	1.00[ASN][1000 genomes]
rs2540243	1.00[ASN][1000 genomes]
rs2540245	1.00[ASN][1000 genomes]
rs2716698	1.00[ASN][1000 genomes]
rs2716700	1.00[ASN][1000 genomes]
rs2716702	1.00[ASN][1000 genomes]
rs2716709	1.00[ASN][1000 genomes]
rs2716733	1.00[ASN][1000 genomes]
rs56104365	1.00[ASN][1000 genomes]
rs58054718	1.00[ASN][1000 genomes]
rs6738748	1.00[ASN][1000 genomes]
rs72934285	1.00[ASN][1000 genomes]
rs72934295	1.00[ASN][1000 genomes]
rs72936030	1.00[ASN][1000 genomes]
rs72936034	1.00[ASN][1000 genomes]
rs72936037	1.00[ASN][1000 genomes]
rs72936041	1.00[ASN][1000 genomes]
rs72936044	1.00[ASN][1000 genomes]
rs72936047	1.00[ASN][1000 genomes]
rs72936048	1.00[ASN][1000 genomes]
rs72936053	1.00[ASN][1000 genomes]
rs72936058	1.00[ASN][1000 genomes]
rs73924940	1.00[ASN][1000 genomes]
rs990405	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873889	chr2:39830183-39950482	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833870	chr2:39837022-40026024	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833881	chr2:39914558-40067256	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39907600-39922200	Weak transcription	HSMM	muscle
2	chr2:39914200-39926800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:39914400-39923400	Weak transcription	Fetal Brain Male	brain
4	chr2:39917600-39922600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:39917600-39923200	Weak transcription	Aorta	Aorta
6	chr2:39920600-39923400	Weak transcription	Fetal Kidney	kidney
7	chr2:39920800-39922600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:39920800-39922600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:39921400-39923600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:39921400-39924800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:39921600-39923600	Enhancers	Fetal Heart	heart
12	chr2:39921600-39925200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr2:39921600-39925200	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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