Variant report

Variant	rs73931638
Chromosome Location	chr19:37107529-37107530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37106532..37109386-chr19:37111281..37113629,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1986078	1.00[AFR][1000 genomes]
rs55824249	1.00[AFR][1000 genomes]
rs56058263	1.00[AFR][1000 genomes]
rs56310944	0.90[AFR][1000 genomes]
rs56705203	0.90[AFR][1000 genomes]
rs57979220	1.00[AFR][1000 genomes]
rs59181027	1.00[AFR][1000 genomes]
rs59185276	1.00[AFR][1000 genomes]
rs61677514	0.81[AFR][1000 genomes]
rs73928564	1.00[AFR][1000 genomes]
rs73929168	0.90[AFR][1000 genomes]
rs73931035	1.00[AFR][1000 genomes]
rs73931630	1.00[AFR][1000 genomes]
rs73931635	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3434386	chr19:37073454-37114509	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37096800-37110000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:37097000-37107800	Weak transcription	Gastric	stomach
3	chr19:37097000-37112600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:37097200-37109600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr19:37097200-37110000	Weak transcription	NHLF	lung
6	chr19:37098000-37118200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:37098000-37156000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:37098200-37108400	Strong transcription	Brain Inferior Temporal Lobe	brain
9	chr19:37098200-37120400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:37098800-37108200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr19:37099000-37109200	Strong transcription	Dnd41	blood
12	chr19:37099200-37110000	Strong transcription	Brain Cingulate Gyrus	brain
13	chr19:37099600-37108400	Strong transcription	Fetal Muscle Leg	muscle
14	chr19:37100200-37107600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr19:37101400-37112800	Weak transcription	Osteobl	bone
16	chr19:37101800-37111000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr19:37102000-37118600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr19:37102200-37135200	ZNF genes & repeats	Fetal Brain Female	brain
19	chr19:37103000-37118600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr19:37103200-37108200	Weak transcription	Brain Substantia Nigra	brain
21	chr19:37103200-37109200	Weak transcription	Right Ventricle	heart
22	chr19:37103600-37112600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr19:37104000-37107800	Weak transcription	Brain Anterior Caudate	brain
24	chr19:37104400-37114200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
25	chr19:37104400-37118400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr19:37104400-37125600	ZNF genes & repeats	Brain Germinal Matrix	brain
27	chr19:37105600-37107600	Weak transcription	HepG2	liver
28	chr19:37105600-37110200	Weak transcription	NHDF-Ad	bronchial
29	chr19:37105600-37115200	ZNF genes & repeats	Primary B cells from cord blood	blood
30	chr19:37105800-37107600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr19:37106000-37107600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr19:37106200-37109600	Strong transcription	Fetal Heart	heart
33	chr19:37106400-37108600	Strong transcription	Placenta	Placenta
34	chr19:37106400-37115400	ZNF genes & repeats	Primary T cells from cord blood	blood
35	chr19:37106600-37107800	Weak transcription	Fetal Kidney	kidney
36	chr19:37106800-37107600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr19:37106800-37108200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr19:37106800-37108200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr19:37106800-37110400	ZNF genes & repeats	Fetal Brain Male	brain
40	chr19:37106800-37110800	Strong transcription	HSMMtube	muscle
41	chr19:37106800-37114400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
42	chr19:37106800-37151000	ZNF genes & repeats	Adipose Nuclei	Adipose
43	chr19:37106800-37156200	ZNF genes & repeats	Liver	Liver
44	chr19:37107000-37107600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr19:37107000-37107600	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr19:37107000-37107800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr19:37107000-37108000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
48	chr19:37107000-37108000	Strong transcription	Fetal Lung	lung
49	chr19:37107000-37108000	ZNF genes & repeats	Fetal Stomach	stomach
50	chr19:37107000-37108400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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