Variant report

Variant	rs73929168
Chromosome Location	chr19:37157375-37157376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37018139..37019685-chr19:37156038..37157932,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254004	Chromatin interaction
ENSG00000228629	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1986078	0.90[AFR][1000 genomes]
rs55824249	0.90[AFR][1000 genomes]
rs56058263	0.90[AFR][1000 genomes]
rs56310944	1.00[AFR][1000 genomes]
rs56705203	1.00[AFR][1000 genomes]
rs57979220	0.90[AFR][1000 genomes]
rs59181027	0.90[AFR][1000 genomes]
rs59185276	0.90[AFR][1000 genomes]
rs73928564	0.90[AFR][1000 genomes]
rs73931035	0.90[AFR][1000 genomes]
rs73931630	0.90[AFR][1000 genomes]
rs73931638	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3492171	chr19:37122012-37190210	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
8	esv3492172	chr19:37122562-37190060	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
9	esv3492173	chr19:37122562-37190060	Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
10	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv3420176	chr19:37130161-37207917	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
13	nsv1061250	chr19:37134068-37188771	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a
14	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37156600-37157400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
2	chr19:37156600-37157400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:37156600-37157400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr19:37156600-37157600	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr19:37156600-37157600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:37156600-37157600	Flanking Active TSS	Liver	Liver
7	chr19:37156600-37157600	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr19:37156600-37157600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr19:37156600-37158600	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr19:37156600-37158600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:37156600-37158600	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr19:37156600-37158600	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr19:37156600-37158600	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr19:37156600-37158600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr19:37156600-37158600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr19:37156600-37158600	Active TSS	Muscle Satellite Cultured Cells	--
17	chr19:37156600-37158600	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr19:37156600-37158600	Active TSS	Colon Smooth Muscle	Colon
19	chr19:37156600-37158600	Active TSS	HSMM	muscle
20	chr19:37156600-37158600	Active TSS	NHDF-Ad	bronchial
21	chr19:37156600-37158600	Active TSS	NHLF	lung
22	chr19:37156600-37159400	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr19:37156600-37159400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr19:37156600-37159600	Active TSS	Rectal Smooth Muscle	rectum
25	chr19:37156600-37160200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr19:37156800-37157400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr19:37156800-37157400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr19:37156800-37157400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr19:37156800-37157400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr19:37156800-37157400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr19:37156800-37157400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr19:37156800-37157400	Flanking Active TSS	Fetal Brain Male	brain
33	chr19:37156800-37157400	Flanking Active TSS	Placenta	Placenta
34	chr19:37156800-37157600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr19:37156800-37157600	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr19:37156800-37157600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr19:37156800-37157600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr19:37156800-37157600	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr19:37156800-37157800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
40	chr19:37156800-37157800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr19:37156800-37157800	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr19:37156800-37158200	Active TSS	K562	blood
43	chr19:37156800-37158400	Active TSS	Esophagus	oesophagus
44	chr19:37156800-37158600	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr19:37156800-37158600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr19:37156800-37158600	Active TSS	Fetal Brain Female	brain
47	chr19:37156800-37158600	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr19:37156800-37158600	Active TSS	Psoas Muscle	Psoas
49	chr19:37156800-37158600	Active TSS	HUVEC	blood vessel
50	chr19:37156800-37158600	Active TSS	NH-A	brain

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