Variant report

Variant	rs73932091
Chromosome Location	chr19:42280624-42280625
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42252191..42260165-chr19:42275924..42285275,20	MCF-7	breast:
2	chr19:42208175..42212316-chr19:42277076..42281781,5	MCF-7	breast:
3	chr19:42280334..42281890-chr19:42288112..42290516,2	MCF-7	breast:
4	chr19:42277316..42282861-chr19:42295271..42298784,10	MCF-7	breast:
5	chr19:42250551..42264892-chr19:42273965..42282481,23	MCF-7	breast:
6	chr19:42278432..42280724-chr19:42363610..42365234,2	MCF-7	breast:
7	chr19:42278812..42280999-chr4:184365517..184367399,2	MCF-7	breast:
8	chr19:42278941..42284055-chr19:42287718..42293319,7	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000086548	Chromatin interaction
ENSG00000105372	Chromatin interaction
ENSG00000168564	Chromatin interaction
ENSG00000268833	Chromatin interaction
ENSG00000007306	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55652557	1.00[EUR][1000 genomes]
rs56306780	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv579615	chr19:42221434-42310388	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3430577	chr19:42247653-42285973	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv911774	chr19:42250325-42288821	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3384883	chr19:42253458-42288853	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3319044	chr19:42257039-42297123	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3319045	chr19:42257039-42297123	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv2763205	chr19:42258547-42290598	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv911775	chr19:42259228-42288821	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42274800-42281400	Enhancers	Fetal Intestine Small	intestine
2	chr19:42275200-42281000	Enhancers	Fetal Intestine Large	intestine
3	chr19:42276200-42282400	Enhancers	Stomach Mucosa	stomach
4	chr19:42276800-42282200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr19:42278200-42281000	Weak transcription	Esophagus	oesophagus
6	chr19:42279000-42281400	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr19:42280200-42281000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr19:42280600-42281000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr19:42280600-42281000	Enhancers	Duodenum Mucosa	Duodenum
10	chr19:42280600-42281200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr19:42280600-42281200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr19:42280600-42281200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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