Variant report

Variant	rs73933256
Chromosome Location	chr19:40842737-40842738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:40842267..40845117-chr19:40949082..40951268,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268366	Chromatin interaction
ENSG00000167565	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10408405	1.00[EUR][1000 genomes]
rs10412156	1.00[EUR][1000 genomes]
rs10422945	1.00[EUR][1000 genomes]
rs10424704	1.00[EUR][1000 genomes]
rs11879375	1.00[EUR][1000 genomes]
rs11881681	1.00[EUR][1000 genomes]
rs13345497	1.00[EUR][1000 genomes]
rs13346024	1.00[EUR][1000 genomes]
rs1865081	1.00[EUR][1000 genomes]
rs268659	1.00[EUR][1000 genomes]
rs28407044	1.00[EUR][1000 genomes]
rs28679850	1.00[EUR][1000 genomes]
rs28728269	1.00[EUR][1000 genomes]
rs3730257	1.00[EUR][1000 genomes]
rs4150984	1.00[EUR][1000 genomes]
rs55646097	1.00[EUR][1000 genomes]
rs55860305	1.00[EUR][1000 genomes]
rs55954198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61018633	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73559625	1.00[EUR][1000 genomes]
rs73559626	1.00[EUR][1000 genomes]
rs73559635	1.00[EUR][1000 genomes]
rs73933258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73933265	1.00[EUR][1000 genomes]
rs73933270	1.00[EUR][1000 genomes]
rs73933276	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv1833489	chr19:40722123-40923908	Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv833831	chr19:40796740-40960865	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv911706	chr19:40842529-40969203	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40820800-40848400	Strong transcription	Dnd41	blood
2	chr19:40821400-40846000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr19:40822000-40843400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr19:40822000-40851000	Strong transcription	Fetal Stomach	stomach
5	chr19:40822200-40843200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:40822200-40845400	Strong transcription	Fetal Muscle Leg	muscle
7	chr19:40822400-40846200	Strong transcription	Fetal Muscle Trunk	muscle
8	chr19:40823400-40845400	Strong transcription	Thymus	Thymus
9	chr19:40824200-40846400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr19:40824200-40848600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr19:40824200-40849600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr19:40824400-40843000	Strong transcription	Fetal Thymus	thymus
13	chr19:40825200-40842800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr19:40825800-40845400	Strong transcription	Stomach Smooth Muscle	stomach
15	chr19:40826400-40843000	Strong transcription	Primary T cells from cord blood	blood
16	chr19:40826400-40847400	Weak transcription	Right Atrium	heart
17	chr19:40826600-40842800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr19:40826600-40853000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr19:40826800-40842800	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr19:40827600-40845000	Strong transcription	GM12878-XiMat	blood
21	chr19:40829200-40843000	Strong transcription	Spleen	Spleen
22	chr19:40832200-40852800	Weak transcription	NHDF-Ad	bronchial
23	chr19:40833800-40846000	Weak transcription	Fetal Heart	heart
24	chr19:40834000-40842800	Strong transcription	Primary hematopoietic stem cells	blood
25	chr19:40834400-40853400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr19:40834800-40845600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr19:40834800-40853600	Weak transcription	Small Intestine	intestine
28	chr19:40836000-40845600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr19:40836000-40853600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr19:40836600-40842800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr19:40836600-40842800	Strong transcription	Esophagus	oesophagus
32	chr19:40836600-40843000	Strong transcription	Rectal Smooth Muscle	rectum
33	chr19:40837200-40848400	Weak transcription	Psoas Muscle	Psoas
34	chr19:40837400-40847600	Weak transcription	Colonic Mucosa	Colon
35	chr19:40837400-40853400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr19:40837400-40853600	Weak transcription	Stomach Mucosa	stomach
37	chr19:40837600-40842800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr19:40837600-40847400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr19:40837800-40846600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr19:40839400-40842800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr19:40839600-40843000	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr19:40839800-40852800	Weak transcription	Hela-S3	cervix
43	chr19:40839800-40853400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr19:40840000-40845000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr19:40840000-40847400	Weak transcription	HMEC	breast
46	chr19:40840000-40852800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr19:40840000-40852800	Weak transcription	HUVEC	blood vessel
48	chr19:40840000-40853400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr19:40840000-40853600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr19:40840200-40850400	Weak transcription	Osteobl	bone

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