Variant report

Variant	rs73933641
Chromosome Location	chr19:42028121-42028122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12327737	1.00[EUR][1000 genomes]
rs55777535	1.00[EUR][1000 genomes]
rs55786333	1.00[EUR][1000 genomes]
rs56030121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58563692	1.00[EUR][1000 genomes]
rs59823881	1.00[EUR][1000 genomes]
rs60118562	1.00[EUR][1000 genomes]
rs73560846	1.00[EUR][1000 genomes]
rs73931497	1.00[EUR][1000 genomes]
rs73931501	1.00[EUR][1000 genomes]
rs73931502	1.00[EUR][1000 genomes]
rs73933642	1.00[AMR][1000 genomes]
rs73933647	1.00[EUR][1000 genomes]
rs9973242	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510767	chr19:41962486-42049165	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv911770	chr19:41962486-42066279	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv911771	chr19:41962486-42085873	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1055515	chr19:41968797-42057334	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv911772	chr19:41985624-42066279	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv911773	chr19:42001210-42085873	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv579601	chr19:42006714-42031592	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
8	nsv579602	chr19:42015468-42047924	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42027200-42029400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr19:42027400-42028400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:42027400-42029200	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr19:42027600-42028400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
5	chr19:42027600-42028400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr19:42027600-42028400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:42027600-42028600	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
8	chr19:42027600-42028600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
9	chr19:42027600-42028600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr19:42027600-42028600	Enhancers	Pancreas	Pancrea
11	chr19:42027600-42028800	Flanking Active TSS	Primary B cells from peripheral blood	blood
12	chr19:42027600-42028800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
13	chr19:42027600-42029000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr19:42027600-42029000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
15	chr19:42027800-42028200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr19:42027800-42028200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
17	chr19:42027800-42028200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
18	chr19:42027800-42028200	Bivalent Enhancer	Left Ventricle	heart
19	chr19:42027800-42028400	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr19:42027800-42028400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr19:42027800-42028600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr19:42027800-42028600	Bivalent/Poised TSS	Colonic Mucosa	Colon
23	chr19:42027800-42028800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr19:42027800-42028800	Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr19:42027800-42028800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr19:42027800-42028800	Active TSS	GM12878-XiMat	blood
27	chr19:42027800-42029000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
28	chr19:42027800-42029000	Active TSS	Right Atrium	heart
29	chr19:42027800-42029000	Bivalent/Poised TSS	Thymus	Thymus
30	chr19:42028000-42028200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
31	chr19:42028000-42028200	Active TSS	Primary hematopoietic stem cells	blood
32	chr19:42028000-42028200	Bivalent/Poised TSS	Adipose Nuclei	Adipose
33	chr19:42028000-42028400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
34	chr19:42028000-42028400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
35	chr19:42028000-42028600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr19:42028000-42028800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
37	chr19:42028000-42028800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
38	chr19:42028000-42028800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr19:42028000-42028800	Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr19:42028000-42028800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr19:42028000-42028800	Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr19:42028000-42029000	Bivalent/Poised TSS	A549	lung

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