Variant report

Variant	rs73941790
Chromosome Location	chr18:9028732-9028733
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73394141	1.00[AMR][1000 genomes]
rs8088641	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9022800-9044800	Weak transcription	Right Atrium	heart
2	chr18:9023000-9033200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:9023200-9029000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr18:9024400-9030000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:9026000-9029200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr18:9026200-9028800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr18:9026400-9029000	Weak transcription	Osteobl	bone
8	chr18:9026400-9029200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr18:9026600-9028800	Weak transcription	NHDF-Ad	bronchial
10	chr18:9026600-9029400	Weak transcription	HSMM	muscle
11	chr18:9027600-9028800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr18:9028200-9029400	Enhancers	K562	blood
13	chr18:9028400-9029800	Enhancers	NHEK	skin
14	chr18:9028600-9030000	Enhancers	HSMMtube	muscle
15	chr18:9028600-9030200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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