Variant report

Variant	rs8088641
Chromosome Location	chr18:8981663-8981664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:8615811..8618362-chr18:8979666..8982599,2	K562	blood:
2	chr18:8981074..8983974-chr18:9054070..9056499,2	MCF-7	breast:
3	chr18:8979245..8982600-chr18:8987803..8990531,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NDUFV2-3	chr18:8981415-8981901	l_1519_chr18:8964492-8969328_colon

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs668986	1.00[AMR][1000 genomes]
rs73941790	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8961800-8982400	Weak transcription	NHDF-Ad	bronchial
2	chr18:8963800-8982200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:8978200-8983000	Enhancers	Colon Smooth Muscle	Colon
4	chr18:8978800-8983200	Enhancers	A549	lung
5	chr18:8978800-8984600	Enhancers	Rectal Smooth Muscle	rectum
6	chr18:8979200-8982200	Weak transcription	Fetal Thymus	thymus
7	chr18:8979400-8982000	Weak transcription	Primary B cells from cord blood	blood
8	chr18:8979600-8982000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr18:8980000-8981800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr18:8980000-8982000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr18:8980600-8983600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr18:8980800-8981800	Enhancers	Stomach Smooth Muscle	stomach
13	chr18:8980800-8982400	Weak transcription	NH-A	brain
14	chr18:8980800-8983400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr18:8981200-8982000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr18:8981200-8982800	Weak transcription	Placenta	Placenta
17	chr18:8981200-8987000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr18:8981400-8981800	Weak transcription	K562	blood
19	chr18:8981400-8982400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr18:8981400-8982400	Weak transcription	HepG2	liver
21	chr18:8981400-8982600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr18:8981400-8982800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr18:8981400-8982800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr18:8981400-8982800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr18:8981400-8982800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:8981400-8982800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr18:8981400-8982800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr18:8981400-8988000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr18:8981600-8982600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr18:8981600-8982800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr18:8981600-8982800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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