Variant report

Variant	rs73942562
Chromosome Location	chr2:72437219-72437220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72432812..72434707-chr2:72436307..72438652,2	MCF-7	breast:
2	chr2:72431398..72433535-chr2:72436487..72438674,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59375712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942565	0.83[AFR][1000 genomes]
rs73942566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72426800-72437600	Weak transcription	NH-A	brain
2	chr2:72432800-72437600	Weak transcription	Colonic Mucosa	Colon
3	chr2:72432800-72437600	Weak transcription	Esophagus	oesophagus
4	chr2:72432800-72437600	Weak transcription	Gastric	stomach
5	chr2:72432800-72437800	Weak transcription	Osteobl	bone
6	chr2:72432800-72438400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:72432800-72438400	Weak transcription	NHDF-Ad	bronchial
8	chr2:72432800-72441600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:72432800-72456600	Weak transcription	Psoas Muscle	Psoas
10	chr2:72433000-72441600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:72433000-72460600	Weak transcription	Pancreas	Pancrea
12	chr2:72433200-72437600	Weak transcription	Stomach Mucosa	stomach
13	chr2:72433200-72437800	Weak transcription	Ovary	ovary
14	chr2:72433200-72438600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:72433200-72440200	Weak transcription	Left Ventricle	heart
16	chr2:72433200-72442200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr2:72433200-72450000	Weak transcription	Brain Angular Gyrus	brain
18	chr2:72433200-72450000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr2:72433200-72466000	Weak transcription	Right Ventricle	heart
20	chr2:72433200-72468600	Weak transcription	Right Atrium	heart
21	chr2:72433400-72437400	Weak transcription	Fetal Heart	heart
22	chr2:72433400-72437600	Weak transcription	Fetal Intestine Small	intestine
23	chr2:72433400-72437800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr2:72433400-72450200	Weak transcription	Brain Anterior Caudate	brain
25	chr2:72433600-72437600	Weak transcription	Fetal Intestine Large	intestine
26	chr2:72433600-72437800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:72433600-72437800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr2:72433600-72439000	Weak transcription	Small Intestine	intestine
29	chr2:72433600-72442000	Weak transcription	Fetal Stomach	stomach
30	chr2:72433800-72437400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr2:72436600-72439000	Enhancers	A549	lung

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