Variant report

Variant	rs73942566
Chromosome Location	chr2:72442468-72442469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72441964..72443908-chr2:72444024..72446667,3	MCF-7	breast:
2	chr2:72442225..72444507-chr2:72444653..72446304,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59375712	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73942565	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72432800-72456600	Weak transcription	Psoas Muscle	Psoas
2	chr2:72433000-72460600	Weak transcription	Pancreas	Pancrea
3	chr2:72433200-72450000	Weak transcription	Brain Angular Gyrus	brain
4	chr2:72433200-72450000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:72433200-72466000	Weak transcription	Right Ventricle	heart
6	chr2:72433200-72468600	Weak transcription	Right Atrium	heart
7	chr2:72433400-72450200	Weak transcription	Brain Anterior Caudate	brain
8	chr2:72438200-72446400	Weak transcription	Fetal Heart	heart
9	chr2:72438400-72449800	Weak transcription	HMEC	breast
10	chr2:72440400-72445200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr2:72441000-72462800	Weak transcription	Left Ventricle	heart
12	chr2:72441600-72442600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:72441600-72442600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:72441600-72442600	Enhancers	HUVEC	blood vessel
15	chr2:72441600-72442600	Enhancers	Osteobl	bone
16	chr2:72441600-72443400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:72441800-72442600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:72441800-72442600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:72441800-72442600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr2:72441800-72442600	Flanking Active TSS	A549	lung
21	chr2:72442000-72442800	Enhancers	Brain Substantia Nigra	brain
22	chr2:72442200-72442600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:72442200-72442800	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr2:72442400-72442600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:72442400-72446200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:72442400-72446200	Weak transcription	HepG2	liver
27	chr2:72442400-72447000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr2:72442400-72447000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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