Variant report

Variant	rs73943243
Chromosome Location	chr18:11245765-11245766
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56253591	1.00[AMR][1000 genomes]
rs73943242	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73943245	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73943247	1.00[AMR][1000 genomes]
rs73943263	1.00[AMR][1000 genomes]
rs73943270	1.00[AMR][1000 genomes]
rs73943285	1.00[AMR][1000 genomes]
rs73943291	1.00[AMR][1000 genomes]
rs73943293	1.00[AMR][1000 genomes]
rs73943297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11242400-11247800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:11245200-11246200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr18:11245200-11246400	Weak transcription	Fetal Muscle Leg	muscle
4	chr18:11245400-11246200	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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