Variant report

Variant	rs73943263
Chromosome Location	chr18:11311403-11311404
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55917350	1.00[AMR][1000 genomes]
rs56253591	1.00[AMR][1000 genomes]
rs73391165	1.00[AMR][1000 genomes]
rs73391167	1.00[AMR][1000 genomes]
rs73391170	1.00[AMR][1000 genomes]
rs73391171	1.00[AMR][1000 genomes]
rs73403141	1.00[AMR][1000 genomes]
rs73403146	1.00[AMR][1000 genomes]
rs73943242	1.00[AMR][1000 genomes]
rs73943243	1.00[AMR][1000 genomes]
rs73943245	1.00[AMR][1000 genomes]
rs73943247	1.00[AMR][1000 genomes]
rs73943270	1.00[AMR][1000 genomes]
rs73943285	1.00[AMR][1000 genomes]
rs73943291	1.00[AMR][1000 genomes]
rs73943293	1.00[AMR][1000 genomes]
rs73943297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1057976	chr18:11251898-11664914	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv543650	chr18:11251898-11664914	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
6	nsv833589	chr18:11293101-11454521	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11308400-11312800	Weak transcription	Pancreas	Pancrea
2	chr18:11308400-11316000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr18:11310200-11311600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr18:11310400-11320600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr18:11311000-11311600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr18:11311200-11311600	Enhancers	Left Ventricle	heart
7	chr18:11311400-11311600	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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