Variant report

Variant	rs73953836
Chromosome Location	chr18:43966126-43966127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16978543	1.00[AMR][1000 genomes]
rs16978544	1.00[AMR][1000 genomes]
rs16978555	1.00[AMR][1000 genomes]
rs16978556	1.00[AMR][1000 genomes]
rs55701724	1.00[AMR][1000 genomes]
rs60099048	1.00[AMR][1000 genomes]
rs60121328	1.00[AMR][1000 genomes]
rs61617924	1.00[AMR][1000 genomes]
rs7237569	1.00[AMR][1000 genomes]
rs7239657	1.00[AMR][1000 genomes]
rs73953838	1.00[AMR][1000 genomes]
rs73953839	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953840	1.00[AMR][1000 genomes]
rs73953841	1.00[AMR][1000 genomes]
rs73953843	1.00[AMR][1000 genomes]
rs73953845	1.00[AMR][1000 genomes]
rs73953846	1.00[AMR][1000 genomes]
rs8088778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv576812	chr18:43946837-43976847	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43939400-43966800	Weak transcription	Right Ventricle	heart
2	chr18:43939400-43976600	Weak transcription	Hela-S3	cervix
3	chr18:43949400-43972600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:43953400-43966600	Weak transcription	Right Atrium	heart
5	chr18:43954800-43966600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:43955000-43967000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:43955200-43967000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:43956400-43978400	Weak transcription	Liver	Liver
9	chr18:43959400-43966200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:43963000-43972600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr18:43964000-43970400	Enhancers	Fetal Muscle Leg	muscle
12	chr18:43964400-43980800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr18:43965000-43966200	Enhancers	Lung	lung
14	chr18:43965000-43966800	Weak transcription	Spleen	Spleen
15	chr18:43965000-43967000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr18:43965000-43967600	Enhancers	Fetal Brain Male	brain
17	chr18:43965000-43969400	Enhancers	Fetal Heart	heart
18	chr18:43965000-43969600	Enhancers	Fetal Brain Female	brain
19	chr18:43965200-43966600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr18:43965200-43967000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr18:43965400-43966200	Enhancers	Fetal Muscle Trunk	muscle
22	chr18:43965400-43966600	Weak transcription	Psoas Muscle	Psoas
23	chr18:43965800-43966200	Weak transcription	Fetal Stomach	stomach
24	chr18:43965800-43966800	Weak transcription	Brain Germinal Matrix	brain
25	chr18:43965800-43966800	Weak transcription	Colon Smooth Muscle	Colon
26	chr18:43965800-43967000	Weak transcription	Left Ventricle	heart
27	chr18:43965800-43970000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr18:43966000-43966400	Weak transcription	Fetal Lung	lung
29	chr18:43966000-43966800	Weak transcription	Esophagus	oesophagus
30	chr18:43966000-43968000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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