Variant report

Variant	rs73955296
Chromosome Location	chr18:30503730-30503731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11081789	1.00[EUR][1000 genomes]
rs11872801	0.83[AFR][1000 genomes]
rs12457058	1.00[EUR][1000 genomes]
rs1893245	1.00[EUR][1000 genomes]
rs1941261	1.00[EUR][1000 genomes]
rs1941262	1.00[EUR][1000 genomes]
rs1941265	1.00[EUR][1000 genomes]
rs1941270	1.00[EUR][1000 genomes]
rs1941271	1.00[EUR][1000 genomes]
rs2000653	1.00[EUR][1000 genomes]
rs2032183	1.00[EUR][1000 genomes]
rs2155786	0.86[EUR][1000 genomes]
rs2226696	1.00[EUR][1000 genomes]
rs4411577	1.00[EUR][1000 genomes]
rs4799337	1.00[EUR][1000 genomes]
rs4799675	1.00[EUR][1000 genomes]
rs4799676	1.00[EUR][1000 genomes]
rs4799677	1.00[EUR][1000 genomes]
rs6506996	1.00[EUR][1000 genomes]
rs7228416	1.00[EUR][1000 genomes]
rs7230824	1.00[EUR][1000 genomes]
rs7231153	1.00[EUR][1000 genomes]
rs7232256	1.00[EUR][1000 genomes]
rs7235150	1.00[EUR][1000 genomes]
rs7241267	1.00[EUR][1000 genomes]
rs73955293	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs768140	1.00[EUR][1000 genomes]
rs768141	1.00[EUR][1000 genomes]
rs8090702	1.00[EUR][1000 genomes]
rs8091086	1.00[EUR][1000 genomes]
rs8097557	1.00[EUR][1000 genomes]
rs8098125	1.00[EUR][1000 genomes]
rs9304114	1.00[EUR][1000 genomes]
rs948375	1.00[EUR][1000 genomes]
rs9950067	1.00[EUR][1000 genomes]
rs9952405	1.00[EUR][1000 genomes]
rs9966484	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv2250	chr18:30473758-30505927	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1060448	chr18:30481131-30540347	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1056985	chr18:30486272-30540347	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1816769	chr18:30486596-30518855	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv528397	chr18:30498621-30556985	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30500400-30504000	Enhancers	HSMM	muscle
2	chr18:30500600-30503800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr18:30502000-30503800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr18:30502000-30504200	Enhancers	Primary B cells from peripheral blood	blood
5	chr18:30502400-30503800	Enhancers	Primary B cells from cord blood	blood
6	chr18:30502600-30503800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr18:30502800-30503800	Enhancers	Primary hematopoietic stem cells	blood
8	chr18:30502800-30503800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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