Variant report

Variant	rs2155786
Chromosome Location	chr18:30447560-30447561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30445851..30448697-chr18:30721994..30723872,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10853423	1.00[MEX][hapmap]
rs11081789	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11660802	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12457058	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539817	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893245	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893246	1.00[MEX][hapmap]
rs1941261	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941262	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941265	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941267	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941270	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941271	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941283	1.00[MEX][hapmap]
rs2000653	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2032183	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155785	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226696	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4411577	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4799337	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4799671	1.00[ASN][1000 genomes]
rs4799675	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4799676	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4799677	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506993	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506996	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650651	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650652	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650653	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228416	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7230824	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7231153	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7232256	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7235150	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7241267	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73955293	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73955296	0.86[EUR][1000 genomes]
rs768140	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768141	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8090702	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8091086	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8097557	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8098125	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9304114	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948375	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9950067	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9952405	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9966484	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9989606	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2155786	SCGB2A2	trans	brain	seeQTL
rs2155786	SCGB1D2	trans	brain	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30444400-30447600	Weak transcription	Fetal Brain Male	brain
2	chr18:30446000-30453600	Enhancers	Primary B cells from peripheral blood	blood
3	chr18:30446600-30449800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:30447000-30447800	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr18:30447000-30448200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:30447000-30449800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr18:30447200-30447800	Enhancers	Brain Germinal Matrix	brain
8	chr18:30447400-30448000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr18:30447400-30449000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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