Variant report

Variant	rs1539817
Chromosome Location	chr18:30444913-30444914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10853423	1.00[JPT][hapmap]
rs11081789	1.00[ASN][1000 genomes]
rs11660802	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12457058	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12954449	1.00[JPT][hapmap]
rs16963902	1.00[JPT][hapmap]
rs1893245	1.00[ASN][1000 genomes]
rs1893246	1.00[JPT][hapmap]
rs1941254	1.00[JPT][hapmap]
rs1941261	1.00[ASN][1000 genomes]
rs1941262	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1941265	1.00[ASN][1000 genomes]
rs1941267	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941270	1.00[ASN][1000 genomes]
rs1941271	1.00[ASN][1000 genomes]
rs1941281	1.00[JPT][hapmap]
rs1941282	1.00[JPT][hapmap]
rs1941283	1.00[JPT][hapmap]
rs2000653	1.00[ASN][1000 genomes]
rs2032183	1.00[ASN][1000 genomes]
rs2155785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155786	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226696	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4411577	1.00[ASN][1000 genomes]
rs4799337	1.00[ASN][1000 genomes]
rs4799671	1.00[ASN][1000 genomes]
rs4799675	1.00[ASN][1000 genomes]
rs4799676	1.00[ASN][1000 genomes]
rs4799677	1.00[ASN][1000 genomes]
rs6506993	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506996	1.00[ASN][1000 genomes]
rs6650651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228416	1.00[ASN][1000 genomes]
rs7230824	1.00[ASN][1000 genomes]
rs7231153	1.00[ASN][1000 genomes]
rs7232256	1.00[ASN][1000 genomes]
rs7235150	1.00[ASN][1000 genomes]
rs7241267	1.00[ASN][1000 genomes]
rs73955293	1.00[ASN][1000 genomes]
rs768140	1.00[ASN][1000 genomes]
rs768141	1.00[ASN][1000 genomes]
rs8090702	1.00[ASN][1000 genomes]
rs8091086	1.00[ASN][1000 genomes]
rs8097557	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8098125	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9304114	1.00[ASN][1000 genomes]
rs948368	1.00[JPT][hapmap]
rs948375	1.00[ASN][1000 genomes]
rs9950067	1.00[ASN][1000 genomes]
rs9952405	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9962968	1.00[JPT][hapmap]
rs9966484	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9989606	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30442600-30447000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr18:30444400-30447600	Weak transcription	Fetal Brain Male	brain
3	chr18:30444600-30446400	Weak transcription	Primary B cells from cord blood	blood

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