Variant report
| Variant | rs4799671 |
|---|---|
| Chromosome Location | chr18:30443094-30443095 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:45)
| rs_ID | r2[population] |
|---|---|
| rs11081789 | 1.00[ASN][1000 genomes] |
| rs11660802 | 1.00[ASN][1000 genomes] |
| rs12457058 | 1.00[ASN][1000 genomes] |
| rs1539817 | 1.00[ASN][1000 genomes] |
| rs1893245 | 1.00[ASN][1000 genomes] |
| rs1941261 | 1.00[ASN][1000 genomes] |
| rs1941262 | 1.00[ASN][1000 genomes] |
| rs1941265 | 1.00[ASN][1000 genomes] |
| rs1941267 | 1.00[ASN][1000 genomes] |
| rs1941270 | 1.00[ASN][1000 genomes] |
| rs1941271 | 1.00[ASN][1000 genomes] |
| rs2000653 | 1.00[ASN][1000 genomes] |
| rs2032183 | 1.00[ASN][1000 genomes] |
| rs2155785 | 1.00[ASN][1000 genomes] |
| rs2155786 | 1.00[ASN][1000 genomes] |
| rs2226696 | 1.00[ASN][1000 genomes] |
| rs4411577 | 1.00[ASN][1000 genomes] |
| rs4799337 | 1.00[ASN][1000 genomes] |
| rs4799675 | 1.00[ASN][1000 genomes] |
| rs4799676 | 1.00[ASN][1000 genomes] |
| rs4799677 | 1.00[ASN][1000 genomes] |
| rs6506993 | 1.00[ASN][1000 genomes] |
| rs6506996 | 1.00[ASN][1000 genomes] |
| rs6650651 | 1.00[ASN][1000 genomes] |
| rs6650652 | 1.00[ASN][1000 genomes] |
| rs6650653 | 1.00[ASN][1000 genomes] |
| rs7228416 | 1.00[ASN][1000 genomes] |
| rs7230824 | 1.00[ASN][1000 genomes] |
| rs7231153 | 1.00[ASN][1000 genomes] |
| rs7232256 | 1.00[ASN][1000 genomes] |
| rs7235150 | 1.00[ASN][1000 genomes] |
| rs7241267 | 1.00[ASN][1000 genomes] |
| rs73955293 | 1.00[ASN][1000 genomes] |
| rs768140 | 1.00[ASN][1000 genomes] |
| rs768141 | 1.00[ASN][1000 genomes] |
| rs8090702 | 1.00[ASN][1000 genomes] |
| rs8091086 | 1.00[ASN][1000 genomes] |
| rs8097557 | 1.00[ASN][1000 genomes] |
| rs8098125 | 1.00[ASN][1000 genomes] |
| rs9304114 | 1.00[ASN][1000 genomes] |
| rs948375 | 1.00[ASN][1000 genomes] |
| rs9950067 | 1.00[ASN][1000 genomes] |
| rs9952405 | 1.00[ASN][1000 genomes] |
| rs9966484 | 1.00[ASN][1000 genomes] |
| rs9989606 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758474 | chr18:30383327-30574737 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2758720 | chr18:30383327-30574737 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv32785 | chr18:30413359-30471471 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:30442600-30447000 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
