Variant report

Variant	rs73956125
Chromosome Location	chr18:44801150-44801151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16950644	1.00[EUR][1000 genomes]
rs16950692	1.00[EUR][1000 genomes]
rs1944287	1.00[EUR][1000 genomes]
rs57828511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7231908	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7241169	1.00[EUR][1000 genomes]
rs7241469	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956126	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956127	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956151	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73956155	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8099226	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv828226	chr18:44762014-44801196	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44800800-44802200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr18:44801000-44801200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links