Variant report

Variant	rs16950644
Chromosome Location	chr18:44810168-44810169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:83)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:83 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr18:44809831-44810304	HCT-116	colon:	n/a	n/a
2	CTCF	chr18:44810060-44810210	GM12874	blood:	n/a	n/a
3	CTCF	chr18:44809949-44810240	A549	lung:	n/a	n/a
4	RAD21	chr18:44809905-44810200	H1-hESC	embryonic stem cell:	n/a	n/a
5	RAD21	chr18:44809838-44810277	H1-hESC	embryonic stem cell:	n/a	n/a
6	ZNF143	chr18:44809905-44810179	H1-hESC	embryonic stem cell:	n/a	n/a
7	RAD21	chr18:44809944-44810242	HepG2	liver:	n/a	n/a
8	CTCF	chr18:44810020-44810170	MCF-7	breast:	n/a	n/a
9	CTCF	chr18:44810020-44810170	GM12875	blood:	n/a	n/a
10	CTCF	chr18:44810015-44810176	GM12892	blood:	n/a	n/a
11	CTCF	chr18:44810060-44810210	GM12873	blood:	n/a	n/a
12	CTCF	chr18:44810040-44810190	HFF	foreskin:	n/a	n/a
13	CTCF	chr18:44809947-44810172	GM12878	blood:	n/a	n/a
14	CTCF	chr18:44810008-44810170	GM19238	blood:	n/a	n/a
15	CTCF	chr18:44809936-44810179	K562	blood:	n/a	n/a
16	SMC3	chr18:44809871-44810239	HepG2	liver:	n/a	n/a
17	CTCF	chr18:44809790-44810271	HepG2	liver:	n/a	n/a
18	RAD21	chr18:44809867-44810300	MCF-7	breast:	n/a	n/a
19	RAD21	chr18:44809883-44810239	SK-N-SH_RA	brain:	n/a	n/a
20	CTCF	chr18:44809702-44810499	A549	lung:	n/a	n/a
21	CTCF	chr18:44810020-44810170	HCPEpiC	choroid plexus:	n/a	n/a
22	CTCF	chr18:44809939-44810190	Medullo	brain:	n/a	n/a
23	SMC3	chr18:44809861-44810293	Hela-S3	cervix:	n/a	n/a
24	MAX	chr18:44809941-44810199	NB4	blood:	n/a	n/a
25	CTCF	chr18:44809871-44810296	MCF-7	breast:	n/a	n/a
26	RAD21	chr18:44809888-44810259	IMR90	lung:	n/a	n/a
27	CTCF	chr18:44809892-44810256	GM12878	blood:	n/a	n/a
28	RFX5	chr18:44809873-44810206	Hela-S3	cervix:	n/a	n/a
29	RAD21	chr18:44809843-44810250	HepG2	liver:	n/a	n/a
30	CTCF	chr18:44809945-44810185	HepG2	liver:	n/a	n/a
31	RAD21	chr18:44809833-44810264	ECC-1	luminal epithelium:	n/a	n/a
32	CTCF	chr18:44809874-44810188	A549	lung:	n/a	n/a
33	RAD21	chr18:44809875-44810306	ECC-1	luminal epithelium:	n/a	n/a
34	YY1	chr18:44809926-44810207	SK-N-SH_RA	brain:	n/a	n/a
35	SMC3	chr18:44809892-44810285	K562	blood:	n/a	n/a
36	CTCF	chr18:44810020-44810170	AG09309	skin:	n/a	n/a
37	CTCF	chr18:44809946-44810218	LNCaP	prostate:	n/a	n/a
38	CTCF	chr18:44809909-44810242	K562	blood:	n/a	n/a
39	CTCF	chr18:44809979-44810195	Fibrobl	skin:	n/a	n/a
40	CTCF	chr18:44809703-44810466	SK-N-SH	brain:	n/a	n/a
41	RAD21	chr18:44809877-44810235	Hela-S3	cervix:	n/a	n/a
42	CTCF	chr18:44810020-44810170	SK-N-SH_RA	brain:	n/a	n/a
43	CTCF	chr18:44809946-44810200	LNCaP	prostate:	n/a	n/a
44	CTCF	chr18:44810020-44810170	GM12872	blood:	n/a	n/a
45	RAD21	chr18:44809879-44810303	H1-hESC	embryonic stem cell:	n/a	n/a
46	RAD21	chr18:44809838-44810329	A549	lung:	n/a	n/a
47	CTCF	chr18:44809842-44810296	MCF-7	breast:	n/a	n/a
48	RAD21	chr18:44809899-44810216	HepG2	liver:	n/a	n/a
49	CTCF	chr18:44810020-44810170	HBMEC	blood vessel:	n/a	n/a
50	CTCF	chr18:44809902-44810258	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:44626315..44627260-chr18:44809604..44810507,2	K562	blood:
2	chr18:44741605..44742518-chr18:44809606..44810656,4	MCF-7	breast:
3	chr18:44576733..44577369-chr18:44809595..44810437,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000267761	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1347343	0.81[AFR][1000 genomes]
rs16950652	0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs16950692	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1944287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28401248	0.95[ASN][1000 genomes]
rs28455576	0.98[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28737231	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs57828511	1.00[EUR][1000 genomes]
rs7231908	1.00[EUR][1000 genomes]
rs7241169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7241469	1.00[EUR][1000 genomes]
rs73956125	1.00[EUR][1000 genomes]
rs73956126	1.00[EUR][1000 genomes]
rs73956127	1.00[EUR][1000 genomes]
rs73956151	1.00[EUR][1000 genomes]
rs73956155	1.00[EUR][1000 genomes]
rs8087053	0.91[ASN][1000 genomes]
rs8099226	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9946349	1.00[ASN][1000 genomes]
rs9949210	0.95[ASN][1000 genomes]
rs9950003	1.00[ASN][1000 genomes]
rs9950055	1.00[ASN][1000 genomes]
rs9952842	1.00[ASN][1000 genomes]
rs9956537	0.95[ASN][1000 genomes]
rs9959416	0.95[ASN][1000 genomes]
rs9962170	1.00[ASN][1000 genomes]
rs9964499	1.00[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44808200-44810400	Strong transcription	Muscle Satellite Cultured Cells	--

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